miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18232 5' -50 NC_004680.1 + 3455 0.68 0.866136
Target:  5'- cGGCCGGCGagucGUGGGCGucuaucCGGCgGAACAUc -3'
miRNA:   3'- -CUGGUCGU----UACUCGCu-----GUUG-CUUGUG- -5'
18232 5' -50 NC_004680.1 + 3985 0.72 0.69363
Target:  5'- uGACCGGCAcgGAGUGccGCuGCGA-CGCu -3'
miRNA:   3'- -CUGGUCGUuaCUCGC--UGuUGCUuGUG- -5'
18232 5' -50 NC_004680.1 + 4164 0.7 0.780953
Target:  5'- aAUCAGCAcgGAGCuucuCAACGAAaCGCa -3'
miRNA:   3'- cUGGUCGUuaCUCGcu--GUUGCUU-GUG- -5'
18232 5' -50 NC_004680.1 + 5403 0.66 0.94126
Target:  5'- -uCCAGCGAaccAGCGACc-UGAACACg -3'
miRNA:   3'- cuGGUCGUUac-UCGCUGuuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 5584 0.73 0.587261
Target:  5'- uGACCAGCGcgGAcacuuccgGCGACGcugcuggucugcggGCGGGCACc -3'
miRNA:   3'- -CUGGUCGUuaCU--------CGCUGU--------------UGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 7619 0.72 0.69363
Target:  5'- uGACCGGCAccgacugGAGCGcCGGCGGAuuCACu -3'
miRNA:   3'- -CUGGUCGUua-----CUCGCuGUUGCUU--GUG- -5'
18232 5' -50 NC_004680.1 + 8085 0.69 0.848814
Target:  5'- gGAUCAGCAGUaccGAGCG-CcACGAAcCGCa -3'
miRNA:   3'- -CUGGUCGUUA---CUCGCuGuUGCUU-GUG- -5'
18232 5' -50 NC_004680.1 + 12308 0.71 0.727216
Target:  5'- cGACCAGUg--GGGCGGgGGCGAcCGCc -3'
miRNA:   3'- -CUGGUCGuuaCUCGCUgUUGCUuGUG- -5'
18232 5' -50 NC_004680.1 + 12447 0.69 0.830503
Target:  5'- cACCGGUggUG-GCGGCGGCccGAugGCu -3'
miRNA:   3'- cUGGUCGuuACuCGCUGUUG--CUugUG- -5'
18232 5' -50 NC_004680.1 + 12569 0.66 0.946308
Target:  5'- gGAUCGGC-AUGGaCGGCGGCGGuGCGCu -3'
miRNA:   3'- -CUGGUCGuUACUcGCUGUUGCU-UGUG- -5'
18232 5' -50 NC_004680.1 + 12965 0.67 0.911528
Target:  5'- gGACCuGGCcuUGGGCGGCGGCuuGCGg -3'
miRNA:   3'- -CUGG-UCGuuACUCGCUGUUGcuUGUg -5'
18232 5' -50 NC_004680.1 + 14181 0.66 0.932563
Target:  5'- cACCAGCcccGGUGcggaagauauccgccGGCGACAacGCGAACGu -3'
miRNA:   3'- cUGGUCG---UUAC---------------UCGCUGU--UGCUUGUg -5'
18232 5' -50 NC_004680.1 + 14519 0.66 0.946308
Target:  5'- -uUCAGCuccUGcGGCGACGGCG-GCACa -3'
miRNA:   3'- cuGGUCGuu-AC-UCGCUGUUGCuUGUG- -5'
18232 5' -50 NC_004680.1 + 15836 0.67 0.918075
Target:  5'- cGCCcGCGGUGGGUGugGAuuuUGAGCAg -3'
miRNA:   3'- cUGGuCGUUACUCGCugUU---GCUUGUg -5'
18232 5' -50 NC_004680.1 + 19696 0.7 0.780953
Target:  5'- aGACCAGaaggucAUGGGCGGCcACGGuACGCc -3'
miRNA:   3'- -CUGGUCgu----UACUCGCUGuUGCU-UGUG- -5'
18232 5' -50 NC_004680.1 + 22894 0.75 0.512252
Target:  5'- uGACCAuCAGUGAcGCGACGACGGcuacCACa -3'
miRNA:   3'- -CUGGUcGUUACU-CGCUGUUGCUu---GUG- -5'
18232 5' -50 NC_004680.1 + 23770 0.68 0.871952
Target:  5'- cGACCAcGUuuUGGccgaugucaccgauGUGACGGCGAGCGCu -3'
miRNA:   3'- -CUGGU-CGuuACU--------------CGCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 24905 0.66 0.939687
Target:  5'- cGCCGGCGGUG-GUGGCggUuccgguucagaucaGAGCACc -3'
miRNA:   3'- cUGGUCGUUACuCGCUGuuG--------------CUUGUG- -5'
18232 5' -50 NC_004680.1 + 25713 0.67 0.911528
Target:  5'- gGugCGGCGuc-GGCGACGGCGGGgAUg -3'
miRNA:   3'- -CugGUCGUuacUCGCUGUUGCUUgUG- -5'
18232 5' -50 NC_004680.1 + 29167 0.71 0.737126
Target:  5'- cAUCAGCAGUGAcaccacuGCGGCGccgcCGGACACu -3'
miRNA:   3'- cUGGUCGUUACU-------CGCUGUu---GCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.