miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18232 5' -50 NC_004680.1 + 52473 1.09 0.003342
Target:  5'- gGACCAGCAAUGAGCGACAACGAACACc -3'
miRNA:   3'- -CUGGUCGUUACUCGCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 52526 0.8 0.287846
Target:  5'- cGGCUAGUAGuUGGGCGAUAGCGAucaACGCg -3'
miRNA:   3'- -CUGGUCGUU-ACUCGCUGUUGCU---UGUG- -5'
18232 5' -50 NC_004680.1 + 22894 0.75 0.512252
Target:  5'- uGACCAuCAGUGAcGCGACGACGGcuacCACa -3'
miRNA:   3'- -CUGGUcGUUACU-CGCUGUUGCUu---GUG- -5'
18232 5' -50 NC_004680.1 + 49428 0.75 0.523228
Target:  5'- aGGCUGuGCAGUGAGUGAUguuGugGAGCGCg -3'
miRNA:   3'- -CUGGU-CGUUACUCGCUG---UugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 5584 0.73 0.587261
Target:  5'- uGACCAGCGcgGAcacuuccgGCGACGcugcuggucugcggGCGGGCACc -3'
miRNA:   3'- -CUGGUCGUuaCU--------CGCUGU--------------UGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39591 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39735 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39771 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39663 0.73 0.625042
Target:  5'- cGCC-GCAggGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUuaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 51930 0.72 0.670895
Target:  5'- uGACCucuGGC-GUGuGCGGCAGCGcAGCACc -3'
miRNA:   3'- -CUGG---UCGuUACuCGCUGUUGC-UUGUG- -5'
18232 5' -50 NC_004680.1 + 3985 0.72 0.69363
Target:  5'- uGACCGGCAcgGAGUGccGCuGCGA-CGCu -3'
miRNA:   3'- -CUGGUCGUuaCUCGC--UGuUGCUuGUG- -5'
18232 5' -50 NC_004680.1 + 41418 0.72 0.69363
Target:  5'- ---aGGCAucaccgGAGuCGACAGCGAACGCg -3'
miRNA:   3'- cuggUCGUua----CUC-GCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 7619 0.72 0.69363
Target:  5'- uGACCGGCAccgacugGAGCGcCGGCGGAuuCACu -3'
miRNA:   3'- -CUGGUCGUua-----CUCGCuGUUGCUU--GUG- -5'
18232 5' -50 NC_004680.1 + 34651 0.71 0.701531
Target:  5'- -cCCGGCGAcggcacccacaacaUGGGCGGCGcagACGGAUACg -3'
miRNA:   3'- cuGGUCGUU--------------ACUCGCUGU---UGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 57339 0.71 0.716106
Target:  5'- cGGCCGGCGAaccUGAaacGCGuCAcCGAACACu -3'
miRNA:   3'- -CUGGUCGUU---ACU---CGCuGUuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 12308 0.71 0.727216
Target:  5'- cGACCAGUg--GGGCGGgGGCGAcCGCc -3'
miRNA:   3'- -CUGGUCGuuaCUCGCUgUUGCUuGUG- -5'
18232 5' -50 NC_004680.1 + 29167 0.71 0.737126
Target:  5'- cAUCAGCAGUGAcaccacuGCGGCGccgcCGGACACu -3'
miRNA:   3'- cUGGUCGUUACU-------CGCUGUu---GCUUGUG- -5'
18232 5' -50 NC_004680.1 + 39867 0.71 0.738222
Target:  5'- cGCC-GCAGaGAGCGccGCAugGAGCGCc -3'
miRNA:   3'- cUGGuCGUUaCUCGC--UGUugCUUGUG- -5'
18232 5' -50 NC_004680.1 + 30804 0.7 0.759872
Target:  5'- cACCGGCGAccggauggacuUGGguGCGACGACGAucauCACa -3'
miRNA:   3'- cUGGUCGUU-----------ACU--CGCUGUUGCUu---GUG- -5'
18232 5' -50 NC_004680.1 + 4164 0.7 0.780953
Target:  5'- aAUCAGCAcgGAGCuucuCAACGAAaCGCa -3'
miRNA:   3'- cUGGUCGUuaCUCGcu--GUUGCUU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.