Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 3434 | 0.67 | 0.655773 |
Target: 5'- cCGCaGCAucucuggcuaagGCgGCCGGCGAGu-CGUGGGc -3' miRNA: 3'- -GCGcUGU------------UG-CGGCCGCUCuuGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 8314 | 0.71 | 0.466647 |
Target: 5'- uGCGGCccGAC-CCGGCGGGAACGa--- -3' miRNA: 3'- gCGCUG--UUGcGGCCGCUCUUGCacuc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 9397 | 0.74 | 0.294128 |
Target: 5'- aGCGAgAGCGUCGGuUGAGGcgcacgaguugcaGCGUGAGg -3' miRNA: 3'- gCGCUgUUGCGGCC-GCUCU-------------UGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 9525 | 0.69 | 0.569646 |
Target: 5'- uGCuGCggUGgCGGCGAagaacauuGAGCGUGAGa -3' miRNA: 3'- gCGcUGuuGCgGCCGCU--------CUUGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 9591 | 0.68 | 0.612582 |
Target: 5'- uGCuGGCcGCGCgauCGGCGAGAACGUc-- -3' miRNA: 3'- gCG-CUGuUGCG---GCCGCUCUUGCAcuc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 9636 | 0.72 | 0.400563 |
Target: 5'- uGCGGgccgUAACGCUGGUGAGcaguugucGCGUGAGg -3' miRNA: 3'- gCGCU----GUUGCGGCCGCUCu-------UGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 11879 | 0.69 | 0.569646 |
Target: 5'- uGCaGACGGCGCCccGGgGAGAGCGg--- -3' miRNA: 3'- gCG-CUGUUGCGG--CCgCUCUUGCacuc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 12212 | 0.66 | 0.740476 |
Target: 5'- cCGCGGCAGCGuucCCcGCGAGcgguuccgguGGCGUGGu -3' miRNA: 3'- -GCGCUGUUGC---GGcCGCUC----------UUGCACUc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 12233 | 0.73 | 0.340758 |
Target: 5'- gGCGGCAGCGCCGGaCGGGuuGAUGUu-- -3' miRNA: 3'- gCGCUGUUGCGGCC-GCUC--UUGCAcuc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 13656 | 0.66 | 0.709207 |
Target: 5'- gGCGGCGgauacaucuACGCCaauggugaccaGGCGAGGugGcGGGa -3' miRNA: 3'- gCGCUGU---------UGCGG-----------CCGCUCUugCaCUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 13868 | 0.69 | 0.552664 |
Target: 5'- cCGCGACAGCaaCGGCGAcugGGACGguaacggcauccgcaUGAGg -3' miRNA: 3'- -GCGCUGUUGcgGCCGCU---CUUGC---------------ACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 16878 | 0.67 | 0.698624 |
Target: 5'- aCGCGGgAGCuaaaGGCGAuGAugGUGAGu -3' miRNA: 3'- -GCGCUgUUGcgg-CCGCU-CUugCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 18449 | 0.66 | 0.740476 |
Target: 5'- cCGCGGCGGCGUgcauaCGGuUGAGAACacgcugGAGg -3' miRNA: 3'- -GCGCUGUUGCG-----GCC-GCUCUUGca----CUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 18588 | 0.69 | 0.580326 |
Target: 5'- aGCGAuCGACuCCGGgGAGAuguugcgcaacGCGUGAa -3' miRNA: 3'- gCGCU-GUUGcGGCCgCUCU-----------UGCACUc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 20847 | 0.69 | 0.569646 |
Target: 5'- aGCGAuCGACGCUGGCGgcGGAACa---- -3' miRNA: 3'- gCGCU-GUUGCGGCCGC--UCUUGcacuc -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 21645 | 0.69 | 0.53793 |
Target: 5'- gCGCGGugcCGuUGCCGuGCGcGAACGUGGGg -3' miRNA: 3'- -GCGCU---GUuGCGGC-CGCuCUUGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 21940 | 0.68 | 0.612582 |
Target: 5'- aGUGAUgguGACGCCGaaCGAGA-CGUGGGa -3' miRNA: 3'- gCGCUG---UUGCGGCc-GCUCUuGCACUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 25711 | 0.7 | 0.476546 |
Target: 5'- uGCGGCGucgGCGaCGGCGGGGAUGccGAGg -3' miRNA: 3'- gCGCUGU---UGCgGCCGCUCUUGCa-CUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 25831 | 0.7 | 0.486548 |
Target: 5'- gGCGGCGGcCGCCaccacGGCGAGAccACG-GAGc -3' miRNA: 3'- gCGCUGUU-GCGG-----CCGCUCU--UGCaCUC- -5' |
|||||||
18235 | 3' | -55.7 | NC_004680.1 | + | 26097 | 0.7 | 0.517125 |
Target: 5'- cCGCGGCccCGCCGGCuGGAACGc--- -3' miRNA: 3'- -GCGCUGuuGCGGCCGcUCUUGCacuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home