miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18235 3' -55.7 NC_004680.1 + 12212 0.66 0.740476
Target:  5'- cCGCGGCAGCGuucCCcGCGAGcgguuccgguGGCGUGGu -3'
miRNA:   3'- -GCGCUGUUGC---GGcCGCUC----------UUGCACUc -5'
18235 3' -55.7 NC_004680.1 + 52133 0.68 0.634182
Target:  5'- aGCGugA-C-CCGGCcGGAACGUGAa -3'
miRNA:   3'- gCGCugUuGcGGCCGcUCUUGCACUc -5'
18235 3' -55.7 NC_004680.1 + 56053 0.68 0.634182
Target:  5'- uGCGGCGACGCCGacugcccagacuGCGGcGAAUGguacGAGu -3'
miRNA:   3'- gCGCUGUUGCGGC------------CGCU-CUUGCa---CUC- -5'
18235 3' -55.7 NC_004680.1 + 3434 0.67 0.655773
Target:  5'- cCGCaGCAucucuggcuaagGCgGCCGGCGAGu-CGUGGGc -3'
miRNA:   3'- -GCGcUGU------------UG-CGGCCGCUCuuGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 49381 0.67 0.655773
Target:  5'- cCGCGACAGCGCCGuugcuuggcuGCGAuuGGCGgcgGAu -3'
miRNA:   3'- -GCGCUGUUGCGGC----------CGCUc-UUGCa--CUc -5'
18235 3' -55.7 NC_004680.1 + 16878 0.67 0.698624
Target:  5'- aCGCGGgAGCuaaaGGCGAuGAugGUGAGu -3'
miRNA:   3'- -GCGCUgUUGcgg-CCGCU-CUugCACUC- -5'
18235 3' -55.7 NC_004680.1 + 13656 0.66 0.709207
Target:  5'- gGCGGCGgauacaucuACGCCaauggugaccaGGCGAGGugGcGGGa -3'
miRNA:   3'- gCGCUGU---------UGCGG-----------CCGCUCUugCaCUC- -5'
18235 3' -55.7 NC_004680.1 + 38231 0.66 0.716573
Target:  5'- aGCcuGCggUGCCGGCuacaagaacuagggGAGAcaGCGUGAGc -3'
miRNA:   3'- gCGc-UGuuGCGGCCG--------------CUCU--UGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 27276 0.66 0.719717
Target:  5'- gGCGGCGACGCUGccgcCGAGAACcucgccaaGUGGu -3'
miRNA:   3'- gCGCUGUUGCGGCc---GCUCUUG--------CACUc -5'
18235 3' -55.7 NC_004680.1 + 33790 0.68 0.63094
Target:  5'- uGgGACc-UGCCGGCGcauuucgaguaucaGGAAUGUGAGg -3'
miRNA:   3'- gCgCUGuuGCGGCCGC--------------UCUUGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 9591 0.68 0.612582
Target:  5'- uGCuGGCcGCGCgauCGGCGAGAACGUc-- -3'
miRNA:   3'- gCG-CUGuUGCG---GCCGCUCUUGCAcuc -5'
18235 3' -55.7 NC_004680.1 + 9525 0.69 0.569646
Target:  5'- uGCuGCggUGgCGGCGAagaacauuGAGCGUGAGa -3'
miRNA:   3'- gCGcUGuuGCgGCCGCU--------CUUGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 47779 0.76 0.241336
Target:  5'- uGCGAacgggaGACuCCGGCG-GAACGUGAGg -3'
miRNA:   3'- gCGCUg-----UUGcGGCCGCuCUUGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 9397 0.74 0.294128
Target:  5'- aGCGAgAGCGUCGGuUGAGGcgcacgaguugcaGCGUGAGg -3'
miRNA:   3'- gCGCUgUUGCGGCC-GCUCU-------------UGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 9636 0.72 0.400563
Target:  5'- uGCGGgccgUAACGCUGGUGAGcaguugucGCGUGAGg -3'
miRNA:   3'- gCGCU----GUUGCGGCCGCUCu-------UGCACUC- -5'
18235 3' -55.7 NC_004680.1 + 48097 0.71 0.436659
Target:  5'- gCGCGugGgcggaugucaugaGCGCCGGCGAcaagggggaGggUGUGAa -3'
miRNA:   3'- -GCGCugU-------------UGCGGCCGCU---------CuuGCACUc -5'
18235 3' -55.7 NC_004680.1 + 8314 0.71 0.466647
Target:  5'- uGCGGCccGAC-CCGGCGGGAACGa--- -3'
miRNA:   3'- gCGCUG--UUGcGGCCGCUCUUGCacuc -5'
18235 3' -55.7 NC_004680.1 + 25831 0.7 0.486548
Target:  5'- gGCGGCGGcCGCCaccacGGCGAGAccACG-GAGc -3'
miRNA:   3'- gCGCUGUU-GCGG-----CCGCUCU--UGCaCUC- -5'
18235 3' -55.7 NC_004680.1 + 26097 0.7 0.517125
Target:  5'- cCGCGGCccCGCCGGCuGGAACGc--- -3'
miRNA:   3'- -GCGCUGuuGCGGCCGcUCUUGCacuc -5'
18235 3' -55.7 NC_004680.1 + 13868 0.69 0.552664
Target:  5'- cCGCGACAGCaaCGGCGAcugGGACGguaacggcauccgcaUGAGg -3'
miRNA:   3'- -GCGCUGUUGcgGCCGCU---CUUGC---------------ACUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.