miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18235 5' -57.7 NC_004680.1 + 5995 0.66 0.615718
Target:  5'- cAGCgCGUCACCgg-GCGGGUguuCACCa -3'
miRNA:   3'- -UCGaGUAGUGGaggUGCCCGac-GUGG- -5'
18235 5' -57.7 NC_004680.1 + 5603 0.66 0.615718
Target:  5'- cGGCgacgCugCuggUCUGCGGGCggGCACCa -3'
miRNA:   3'- -UCGaguaGugG---AGGUGCCCGa-CGUGG- -5'
18235 5' -57.7 NC_004680.1 + 50335 0.66 0.594109
Target:  5'- gGGCcgaUCAUCACCUCgccgcccugUAUGGGCauugGUAUCg -3'
miRNA:   3'- -UCG---AGUAGUGGAG---------GUGCCCGa---CGUGG- -5'
18235 5' -57.7 NC_004680.1 + 27998 0.66 0.572625
Target:  5'- cGUUCAugcggaaaaaguUCGCCUCCuacGCGGGCgauuuggcUGaCACCc -3'
miRNA:   3'- uCGAGU------------AGUGGAGG---UGCCCG--------AC-GUGG- -5'
18235 5' -57.7 NC_004680.1 + 26178 0.66 0.56195
Target:  5'- cGUUCca-GCCggcggggCCGCGGGaCUGCACa -3'
miRNA:   3'- uCGAGuagUGGa------GGUGCCC-GACGUGg -5'
18235 5' -57.7 NC_004680.1 + 23700 0.67 0.530281
Target:  5'- aAGC-CAUaccaaacccCCUCCuaGGGCUGCGCCc -3'
miRNA:   3'- -UCGaGUAgu-------GGAGGugCCCGACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 33589 0.67 0.509533
Target:  5'- uGGUUCGUCgcacACCUggaaCGCGGuguggaugauguGCUGCGCCa -3'
miRNA:   3'- -UCGAGUAG----UGGAg---GUGCC------------CGACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 28885 0.67 0.509533
Target:  5'- cGCg-AUCGCCUCCgguaGCGGuGCcUGCACa -3'
miRNA:   3'- uCGagUAGUGGAGG----UGCC-CG-ACGUGg -5'
18235 5' -57.7 NC_004680.1 + 21349 0.67 0.499286
Target:  5'- gGGCUCAgCcCCgucggCCACGuauGGCgGCGCCg -3'
miRNA:   3'- -UCGAGUaGuGGa----GGUGC---CCGaCGUGG- -5'
18235 5' -57.7 NC_004680.1 + 45474 0.68 0.489133
Target:  5'- cGGUUCAUUguguuGCCUCCACaGGGUuagGUAUCc -3'
miRNA:   3'- -UCGAGUAG-----UGGAGGUG-CCCGa--CGUGG- -5'
18235 5' -57.7 NC_004680.1 + 12700 0.68 0.479077
Target:  5'- uGC-CAUCGCgUCCAgcgccaugccgcCGGcCUGCACCg -3'
miRNA:   3'- uCGaGUAGUGgAGGU------------GCCcGACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 10798 0.68 0.469123
Target:  5'- cGCccuUgAUCGCCuUCCACGcGGCgaacGCGCCc -3'
miRNA:   3'- uCG---AgUAGUGG-AGGUGC-CCGa---CGUGG- -5'
18235 5' -57.7 NC_004680.1 + 3663 0.68 0.459277
Target:  5'- cAGCgUgAUCcauCUUCCugGGgacGCUGCACCg -3'
miRNA:   3'- -UCG-AgUAGu--GGAGGugCC---CGACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 44238 0.68 0.459277
Target:  5'- aGGCUCAuucggUCACCUCCGCa-GCaGCAgCg -3'
miRNA:   3'- -UCGAGU-----AGUGGAGGUGccCGaCGUgG- -5'
18235 5' -57.7 NC_004680.1 + 42189 0.68 0.449541
Target:  5'- cGCagAUCGCCgaaCAgcUGGGCUGcCACCa -3'
miRNA:   3'- uCGagUAGUGGag-GU--GCCCGAC-GUGG- -5'
18235 5' -57.7 NC_004680.1 + 22177 0.68 0.448574
Target:  5'- cGUUCA-CGCCgagCCugGGGUUcgaggccGCGCCg -3'
miRNA:   3'- uCGAGUaGUGGa--GGugCCCGA-------CGUGG- -5'
18235 5' -57.7 NC_004680.1 + 16830 0.68 0.439921
Target:  5'- cGC-CGUcCACUUCCACGccuGGCgUGUACCg -3'
miRNA:   3'- uCGaGUA-GUGGAGGUGC---CCG-ACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 32988 0.68 0.439921
Target:  5'- gGGgUCAcccuacgguUCACC-CUACGGuGCUGCGCa -3'
miRNA:   3'- -UCgAGU---------AGUGGaGGUGCC-CGACGUGg -5'
18235 5' -57.7 NC_004680.1 + 52945 0.69 0.430418
Target:  5'- cGGCggCAuucUCGuCCgCCGCGaGGCUGUACCu -3'
miRNA:   3'- -UCGa-GU---AGU-GGaGGUGC-CCGACGUGG- -5'
18235 5' -57.7 NC_004680.1 + 54847 0.69 0.430418
Target:  5'- cGCUCAaaCACCUCCGCGu-CUGC-CCg -3'
miRNA:   3'- uCGAGUa-GUGGAGGUGCccGACGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.