miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18238 5' -54.8 NC_004680.1 + 55114 1.11 0.00092
Target:  5'- cUGAUCCUGGACCGCAUCGAAGCCACCc -3'
miRNA:   3'- -ACUAGGACCUGGCGUAGCUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 3806 0.73 0.356221
Target:  5'- cGAcUCUUGGGCCGC-UUGGAcaaccgguGCCACCg -3'
miRNA:   3'- aCU-AGGACCUGGCGuAGCUU--------CGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 2847 0.73 0.364742
Target:  5'- gUGAUgCUGuaguGACCGguUCGccGCCGCCg -3'
miRNA:   3'- -ACUAgGAC----CUGGCguAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 41641 0.73 0.373404
Target:  5'- cGAUUCUGcGGCgGCGaCGAagaaAGCCACCu -3'
miRNA:   3'- aCUAGGAC-CUGgCGUaGCU----UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 13232 0.73 0.382204
Target:  5'- cGGUCCggucggGGACCGCc---AGGCCGCCc -3'
miRNA:   3'- aCUAGGa-----CCUGGCGuagcUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 11181 0.72 0.418756
Target:  5'- --cUCCUGG--CGCGUCGggGUCAUCg -3'
miRNA:   3'- acuAGGACCugGCGUAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 55081 0.72 0.429174
Target:  5'- aUGAUCCUGG-CCGCccgacguuucauucCGAcccGCCACCg -3'
miRNA:   3'- -ACUAGGACCuGGCGua------------GCUu--CGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 27950 0.71 0.467297
Target:  5'- uUGGUCUUGGGCCGgGUgauucgucCGAGGagauCCGCCg -3'
miRNA:   3'- -ACUAGGACCUGGCgUA--------GCUUC----GGUGG- -5'
18238 5' -54.8 NC_004680.1 + 49562 0.7 0.497775
Target:  5'- gUGAUUUgGGuuuCCGCGUUGAGGCCcacuACCa -3'
miRNA:   3'- -ACUAGGaCCu--GGCGUAGCUUCGG----UGG- -5'
18238 5' -54.8 NC_004680.1 + 7955 0.7 0.508132
Target:  5'- -cAUCCUcaGGGuuGCAUcCGAuguGCCACCa -3'
miRNA:   3'- acUAGGA--CCUggCGUA-GCUu--CGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 54180 0.7 0.508132
Target:  5'- gGAUCC-GGAgacaacauCCGaAUCGAAGUCACCc -3'
miRNA:   3'- aCUAGGaCCU--------GGCgUAGCUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 32094 0.7 0.518579
Target:  5'- ----gUUGGAUCGCAUCGuGGCgACCa -3'
miRNA:   3'- acuagGACCUGGCGUAGCuUCGgUGG- -5'
18238 5' -54.8 NC_004680.1 + 19912 0.69 0.575196
Target:  5'- aGAUCCgggucaGGAUCaggcaaaGCAUCGGgccggaagaacaaccAGCCACCa -3'
miRNA:   3'- aCUAGGa-----CCUGG-------CGUAGCU---------------UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 8786 0.69 0.592596
Target:  5'- aUGGUCCUGccggcggaGACC-CGUCccggcgcggucaaGggGCCGCCg -3'
miRNA:   3'- -ACUAGGAC--------CUGGcGUAG-------------CuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 43839 0.68 0.626516
Target:  5'- gUGAUCa--GACaCGUAUCGAAGCgACUa -3'
miRNA:   3'- -ACUAGgacCUG-GCGUAGCUUCGgUGG- -5'
18238 5' -54.8 NC_004680.1 + 56217 0.68 0.626516
Target:  5'- aGAUCgccaaaCUGGacgaccccaGCCGCGUCGAAGUucucauccuCACCg -3'
miRNA:   3'- aCUAG------GACC---------UGGCGUAGCUUCG---------GUGG- -5'
18238 5' -54.8 NC_004680.1 + 27360 0.68 0.637482
Target:  5'- aGGUUCUcGGCggcaGCGUCGccGCCGCCg -3'
miRNA:   3'- aCUAGGAcCUGg---CGUAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 2117 0.68 0.637482
Target:  5'- aGAggCUGGcCCGUAUCGu--CCACCa -3'
miRNA:   3'- aCUagGACCuGGCGUAGCuucGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 37916 0.68 0.648443
Target:  5'- gUGcgCCUGGACUGuCGcCGAacuGGUCACUg -3'
miRNA:   3'- -ACuaGGACCUGGC-GUaGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 11262 0.68 0.648443
Target:  5'- gGAuUCCUGGcauGCCGCAg-GAcGCUGCCg -3'
miRNA:   3'- aCU-AGGACC---UGGCGUagCUuCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.