Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18238 | 5' | -54.8 | NC_004680.1 | + | 34025 | 0.66 | 0.734704 |
Target: 5'- cGGUCCa--ACCGaGUCGuuGCCGCCg -3' miRNA: 3'- aCUAGGaccUGGCgUAGCuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 43723 | 0.67 | 0.681195 |
Target: 5'- aGuUCCUGGACCGCGaagcgcUGGAGUUgaACCu -3' miRNA: 3'- aCuAGGACCUGGCGUa-----GCUUCGG--UGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 10010 | 0.67 | 0.692034 |
Target: 5'- cGGUC--GGGCCgGCAUCGAcGUCGCUg -3' miRNA: 3'- aCUAGgaCCUGG-CGUAGCUuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 10903 | 0.67 | 0.692034 |
Target: 5'- cGAUUCaGGACCaGCccgacggCGAGGaCCGCCu -3' miRNA: 3'- aCUAGGaCCUGG-CGua-----GCUUC-GGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 20743 | 0.67 | 0.702815 |
Target: 5'- -cGUCUUGG-CCGCcgAUCGGGccuguuccGCCGCCa -3' miRNA: 3'- acUAGGACCuGGCG--UAGCUU--------CGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 10977 | 0.67 | 0.713528 |
Target: 5'- cGuUCCgGGACUGguUCGGcAGCgACCc -3' miRNA: 3'- aCuAGGaCCUGGCguAGCU-UCGgUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 37839 | 0.67 | 0.717792 |
Target: 5'- gGAgCUgugGGGCCGCAcuccguguguggagaUCGAaguGGUCACCg -3' miRNA: 3'- aCUaGGa--CCUGGCGU---------------AGCU---UCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 437 | 0.67 | 0.724162 |
Target: 5'- ----aCUGGaAUgGCAgaUUGAGGCCACCg -3' miRNA: 3'- acuagGACC-UGgCGU--AGCUUCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 33128 | 0.66 | 0.734704 |
Target: 5'- ------aGGGCCGCAUC---GCCACCa -3' miRNA: 3'- acuaggaCCUGGCGUAGcuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 26478 | 0.68 | 0.659389 |
Target: 5'- gGAUCgCU-GACCGCAUCGccgacAGGaUCACCg -3' miRNA: 3'- aCUAG-GAcCUGGCGUAGC-----UUC-GGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 37916 | 0.68 | 0.648443 |
Target: 5'- gUGcgCCUGGACUGuCGcCGAacuGGUCACUg -3' miRNA: 3'- -ACuaGGACCUGGC-GUaGCU---UCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 11262 | 0.68 | 0.648443 |
Target: 5'- gGAuUCCUGGcauGCCGCAg-GAcGCUGCCg -3' miRNA: 3'- aCU-AGGACC---UGGCGUagCUuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 2847 | 0.73 | 0.364742 |
Target: 5'- gUGAUgCUGuaguGACCGguUCGccGCCGCCg -3' miRNA: 3'- -ACUAgGAC----CUGGCguAGCuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 11181 | 0.72 | 0.418756 |
Target: 5'- --cUCCUGG--CGCGUCGggGUCAUCg -3' miRNA: 3'- acuAGGACCugGCGUAGCuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 27950 | 0.71 | 0.467297 |
Target: 5'- uUGGUCUUGGGCCGgGUgauucgucCGAGGagauCCGCCg -3' miRNA: 3'- -ACUAGGACCUGGCgUA--------GCUUC----GGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 49562 | 0.7 | 0.497775 |
Target: 5'- gUGAUUUgGGuuuCCGCGUUGAGGCCcacuACCa -3' miRNA: 3'- -ACUAGGaCCu--GGCGUAGCUUCGG----UGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 54180 | 0.7 | 0.508132 |
Target: 5'- gGAUCC-GGAgacaacauCCGaAUCGAAGUCACCc -3' miRNA: 3'- aCUAGGaCCU--------GGCgUAGCUUCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 8786 | 0.69 | 0.592596 |
Target: 5'- aUGGUCCUGccggcggaGACC-CGUCccggcgcggucaaGggGCCGCCg -3' miRNA: 3'- -ACUAGGAC--------CUGGcGUAG-------------CuuCGGUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 56217 | 0.68 | 0.626516 |
Target: 5'- aGAUCgccaaaCUGGacgaccccaGCCGCGUCGAAGUucucauccuCACCg -3' miRNA: 3'- aCUAG------GACC---------UGGCGUAGCUUCG---------GUGG- -5' |
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18238 | 5' | -54.8 | NC_004680.1 | + | 43839 | 0.68 | 0.626516 |
Target: 5'- gUGAUCa--GACaCGUAUCGAAGCgACUa -3' miRNA: 3'- -ACUAGgacCUG-GCGUAGCUUCGgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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