miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 42253 0.68 0.523678
Target:  5'- uCUGCGUggCGGUCCAACccauGCgGgUCAGCCa -3'
miRNA:   3'- -GAUGCG--GCUAGGUUG----CGaCgGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 51701 0.68 0.503064
Target:  5'- --uUGCCGucguUCCAGCGCgGCUC-GCCc -3'
miRNA:   3'- gauGCGGCu---AGGUUGCGaCGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 35205 0.68 0.503064
Target:  5'- -gACGCCGcgaCCAgugacacgACGCaGCCgAGCCa -3'
miRNA:   3'- gaUGCGGCua-GGU--------UGCGaCGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 21458 0.69 0.482811
Target:  5'- -aACGCaGGcUCCGGCGUUGCUC-GCCa -3'
miRNA:   3'- gaUGCGgCU-AGGUUGCGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 29418 0.69 0.472833
Target:  5'- -cGCGUCGAUCUGucgggcACGUU-CCCGGCCc -3'
miRNA:   3'- gaUGCGGCUAGGU------UGCGAcGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 22055 0.69 0.472833
Target:  5'- -cGCGCCGuauAUCgCGAUGCgugGUCCGGCg -3'
miRNA:   3'- gaUGCGGC---UAG-GUUGCGa--CGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 50179 0.69 0.462959
Target:  5'- -cGgGCCGGUCCuACcgGCUGCUC-GCCg -3'
miRNA:   3'- gaUgCGGCUAGGuUG--CGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 49812 0.69 0.458063
Target:  5'- -cACGUCGGUCCGucggguucggaccaaGCGCguacuucagccgcacGCUCAGCCa -3'
miRNA:   3'- gaUGCGGCUAGGU---------------UGCGa--------------CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 36910 0.7 0.424596
Target:  5'- gUACGUCGAggCCAAUGCU-CCCugcaguuGCCg -3'
miRNA:   3'- gAUGCGGCUa-GGUUGCGAcGGGu------CGG- -5'
18239 3' -57.1 NC_004680.1 + 12373 0.7 0.415305
Target:  5'- -gGCGCgGGUCCAcUGCcggGUCCGGCUc -3'
miRNA:   3'- gaUGCGgCUAGGUuGCGa--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 504 0.7 0.415305
Target:  5'- gCUGCGCCGGUgugcCCAcCGgaGCCUGGUg -3'
miRNA:   3'- -GAUGCGGCUA----GGUuGCgaCGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 8474 0.7 0.397103
Target:  5'- gCUAgcUGCCG-UCCGAguacUGCUcaGCCCAGCCc -3'
miRNA:   3'- -GAU--GCGGCuAGGUU----GCGA--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 9671 0.7 0.397103
Target:  5'- uCU-CGCCGAUC--GCGCgGCCagCAGCCg -3'
miRNA:   3'- -GAuGCGGCUAGguUGCGaCGG--GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 38582 0.7 0.397103
Target:  5'- ---gGUgGAUCCGugGCUgGCCCGGUUg -3'
miRNA:   3'- gaugCGgCUAGGUugCGA-CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 1341 0.7 0.379421
Target:  5'- aUGCuGCCcugCCccgGCUGCCCAGCCg -3'
miRNA:   3'- gAUG-CGGcuaGGuugCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 861 0.71 0.368215
Target:  5'- -gGCGCCGGUUCGgugugacggguuugACGCUG-CCGGCa -3'
miRNA:   3'- gaUGCGGCUAGGU--------------UGCGACgGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 47580 0.71 0.362275
Target:  5'- gUGCGCCgccuacGAUCCGugGUUuCCuCAGCCg -3'
miRNA:   3'- gAUGCGG------CUAGGUugCGAcGG-GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 29579 0.71 0.362275
Target:  5'- uCUugGCCGAUCUugcagguuuggAGCcccgcacCUGCCCAGCa -3'
miRNA:   3'- -GAugCGGCUAGG-----------UUGc------GACGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 27386 0.71 0.362275
Target:  5'- uUGCGUCGAcaCCGACcguGCUGCCUGGUCc -3'
miRNA:   3'- gAUGCGGCUa-GGUUG---CGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 42444 0.71 0.357238
Target:  5'- aUGCGCCGAgaUCGugGcCUGCCCaacacccaaagugcgGGCCa -3'
miRNA:   3'- gAUGCGGCUa-GGUugC-GACGGG---------------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.