miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 12887 0.67 0.587201
Target:  5'- --cCGCCGc-CCAAgGCcagGUCCAGCCc -3'
miRNA:   3'- gauGCGGCuaGGUUgCGa--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12940 0.67 0.587201
Target:  5'- -cGgGUCGAugUCCuuGCGCUGCugggaagccuggCCAGCCa -3'
miRNA:   3'- gaUgCGGCU--AGGu-UGCGACG------------GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 14243 0.67 0.544607
Target:  5'- --gUGCCGAUggUCAAUGUUGgugaCCAGCCg -3'
miRNA:   3'- gauGCGGCUA--GGUUGCGACg---GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 14711 0.66 0.608746
Target:  5'- uUGCGCCGcuacCCGAUGUaGCCCcuggaguggcaAGCCc -3'
miRNA:   3'- gAUGCGGCua--GGUUGCGaCGGG-----------UCGG- -5'
18239 3' -57.1 NC_004680.1 + 15256 0.73 0.270996
Target:  5'- --gUGCCGGUCCAuGCGCUGUCaCGGUa -3'
miRNA:   3'- gauGCGGCUAGGU-UGCGACGG-GUCGg -5'
18239 3' -57.1 NC_004680.1 + 15867 0.66 0.662792
Target:  5'- gUACGCCuauUUCGugGC-GCCUgAGCCg -3'
miRNA:   3'- gAUGCGGcu-AGGUugCGaCGGG-UCGG- -5'
18239 3' -57.1 NC_004680.1 + 16644 0.67 0.5658
Target:  5'- --cUGUCGAUCCGACuGCUGgCgCGGCg -3'
miRNA:   3'- gauGCGGCUAGGUUG-CGACgG-GUCGg -5'
18239 3' -57.1 NC_004680.1 + 17812 0.75 0.199152
Target:  5'- uUGCGCCGcugCgCAAuuUGCUGCCCAGUCu -3'
miRNA:   3'- gAUGCGGCua-G-GUU--GCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 18121 0.66 0.641188
Target:  5'- -cGCGCCGAUCCG--GUUGCaggugguGCCg -3'
miRNA:   3'- gaUGCGGCUAGGUugCGACGggu----CGG- -5'
18239 3' -57.1 NC_004680.1 + 20751 0.67 0.587201
Target:  5'- --cCGCCGAUCgGGC-CUGUUCcGCCg -3'
miRNA:   3'- gauGCGGCUAGgUUGcGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 21413 0.66 0.608746
Target:  5'- -gACGaCGAUCCGGCGaauggggGCCUGGCg -3'
miRNA:   3'- gaUGCgGCUAGGUUGCga-----CGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 21441 0.66 0.619553
Target:  5'- -gGCGCCGccauacguggCCGACGggGCUgAGCCc -3'
miRNA:   3'- gaUGCGGCua--------GGUUGCgaCGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 21458 0.69 0.482811
Target:  5'- -aACGCaGGcUCCGGCGUUGCUC-GCCa -3'
miRNA:   3'- gaUGCGgCU-AGGUUGCGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 22055 0.69 0.472833
Target:  5'- -cGCGCCGuauAUCgCGAUGCgugGUCCGGCg -3'
miRNA:   3'- gaUGCGGC---UAG-GUUGCGa--CGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 24846 0.66 0.608746
Target:  5'- -gGCGCCGGggacuaCAACGCUGCgggcGCCc -3'
miRNA:   3'- gaUGCGGCUag----GUUGCGACGggu-CGG- -5'
18239 3' -57.1 NC_004680.1 + 27386 0.71 0.362275
Target:  5'- uUGCGUCGAcaCCGACcguGCUGCCUGGUCc -3'
miRNA:   3'- gAUGCGGCUa-GGUUG---CGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 27451 0.79 0.112861
Target:  5'- gCUuCGCCgGGUCCcGCGCUGCCUGGUCg -3'
miRNA:   3'- -GAuGCGG-CUAGGuUGCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 27942 0.76 0.165366
Target:  5'- -cGCGCCGAUcgcgcCCAGCGCguccaccaccGUCCGGCCg -3'
miRNA:   3'- gaUGCGGCUA-----GGUUGCGa---------CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 28394 0.68 0.523678
Target:  5'- -aACGCauCGAaacCCAcgGCGCUGCCCuGGCUg -3'
miRNA:   3'- gaUGCG--GCUa--GGU--UGCGACGGG-UCGG- -5'
18239 3' -57.1 NC_004680.1 + 29218 0.67 0.544607
Target:  5'- uCUAguCGCCGAagccguUCCGGgGUUGCCgCGGCg -3'
miRNA:   3'- -GAU--GCGGCU------AGGUUgCGACGG-GUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.