miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 504 0.7 0.415305
Target:  5'- gCUGCGCCGGUgugcCCAcCGgaGCCUGGUg -3'
miRNA:   3'- -GAUGCGGCUA----GGUuGCgaCGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 861 0.71 0.368215
Target:  5'- -gGCGCCGGUUCGgugugacggguuugACGCUG-CCGGCa -3'
miRNA:   3'- gaUGCGGCUAGGU--------------UGCGACgGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 1341 0.7 0.379421
Target:  5'- aUGCuGCCcugCCccgGCUGCCCAGCCg -3'
miRNA:   3'- gAUG-CGGcuaGGuugCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 2867 0.66 0.608746
Target:  5'- cCUGCGCCGGgaCGACGaCUGCacaaAGCa -3'
miRNA:   3'- -GAUGCGGCUagGUUGC-GACGgg--UCGg -5'
18239 3' -57.1 NC_004680.1 + 3311 0.67 0.5658
Target:  5'- ---aGCCGAcuggUUC-GCGCUGUCCGGCa -3'
miRNA:   3'- gaugCGGCU----AGGuUGCGACGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 5666 0.66 0.651999
Target:  5'- --uCGCCGGaagugUCC-GCGCUGgUCAGCUu -3'
miRNA:   3'- gauGCGGCU-----AGGuUGCGACgGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 8130 0.66 0.641188
Target:  5'- -gACGCgGAUUCGGCGgaGUaCCAGUUg -3'
miRNA:   3'- gaUGCGgCUAGGUUGCgaCG-GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 8312 0.67 0.59796
Target:  5'- -aACGCUGcUUCGACGCcuggucGUCCAGCUu -3'
miRNA:   3'- gaUGCGGCuAGGUUGCGa-----CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 8474 0.7 0.397103
Target:  5'- gCUAgcUGCCG-UCCGAguacUGCUcaGCCCAGCCc -3'
miRNA:   3'- -GAU--GCGGCuAGGUU----GCGA--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 9214 0.66 0.608746
Target:  5'- -cGCGCCGGUCaauGGCGCggugGCgCguGCUg -3'
miRNA:   3'- gaUGCGGCUAGg--UUGCGa---CG-GguCGG- -5'
18239 3' -57.1 NC_004680.1 + 9671 0.7 0.397103
Target:  5'- uCU-CGCCGAUC--GCGCgGCCagCAGCCg -3'
miRNA:   3'- -GAuGCGGCUAGguUGCGaCGG--GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 9835 0.68 0.523678
Target:  5'- gCUGCGUCGAaggCUGGCGCggUGgCUGGCCg -3'
miRNA:   3'- -GAUGCGGCUa--GGUUGCG--ACgGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 10361 0.71 0.327268
Target:  5'- -aACGCUGAUCCGggcgguugagaagaAUGCUGCCgGGUUc -3'
miRNA:   3'- gaUGCGGCUAGGU--------------UGCGACGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 10895 0.67 0.543553
Target:  5'- gCUGCaCUGAUCCc-CGCUGCgcccuucUCAGCCg -3'
miRNA:   3'- -GAUGcGGCUAGGuuGCGACG-------GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 11169 0.72 0.299202
Target:  5'- -gGCGCCGGggccgccaCCAAgGCcGCCCGGCa -3'
miRNA:   3'- gaUGCGGCUa-------GGUUgCGaCGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 12154 0.67 0.59796
Target:  5'- -aAC-CCG-UCCGGCGCUGCC--GCCc -3'
miRNA:   3'- gaUGcGGCuAGGUUGCGACGGguCGG- -5'
18239 3' -57.1 NC_004680.1 + 12373 0.7 0.415305
Target:  5'- -gGCGCgGGUCCAcUGCcggGUCCGGCUc -3'
miRNA:   3'- gaUGCGgCUAGGUuGCGa--CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12420 0.67 0.5658
Target:  5'- -gGCGCCuaacCCAGCcccGCUGCCCA-CCa -3'
miRNA:   3'- gaUGCGGcua-GGUUG---CGACGGGUcGG- -5'
18239 3' -57.1 NC_004680.1 + 12709 0.74 0.215391
Target:  5'- -aGCGCCGGgugccaucgcgUCCAGCGCcaUGCCgcCGGCCu -3'
miRNA:   3'- gaUGCGGCU-----------AGGUUGCG--ACGG--GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12787 0.73 0.284824
Target:  5'- -gGCGCCGAUCgCGGCGa--CCUGGCCg -3'
miRNA:   3'- gaUGCGGCUAG-GUUGCgacGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.