miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 55965 1.13 0.000398
Target:  5'- aCUACGCCGAUCCAACGCUGCCCAGCCg -3'
miRNA:   3'- -GAUGCGGCUAGGUUGCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 35879 0.82 0.062533
Target:  5'- -aAgGCCGAUCgGACGCgaagccGCCCAGCCg -3'
miRNA:   3'- gaUgCGGCUAGgUUGCGa-----CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 27451 0.79 0.112861
Target:  5'- gCUuCGCCgGGUCCcGCGCUGCCUGGUCg -3'
miRNA:   3'- -GAuGCGG-CUAGGuUGCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 35638 0.77 0.156703
Target:  5'- cCUGCGgCGAUgUCGACGuUUGCCCAGCUa -3'
miRNA:   3'- -GAUGCgGCUA-GGUUGC-GACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 27942 0.76 0.165366
Target:  5'- -cGCGCCGAUcgcgcCCAGCGCguccaccaccGUCCGGCCg -3'
miRNA:   3'- gaUGCGGCUA-----GGUUGCGa---------CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 56517 0.75 0.199152
Target:  5'- -cACGCCacaCCAGCGCUGUCC-GCCg -3'
miRNA:   3'- gaUGCGGcuaGGUUGCGACGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 17812 0.75 0.199152
Target:  5'- uUGCGCCGcugCgCAAuuUGCUGCCCAGUCu -3'
miRNA:   3'- gAUGCGGCua-G-GUU--GCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12709 0.74 0.215391
Target:  5'- -aGCGCCGGgugccaucgcgUCCAGCGCcaUGCCgcCGGCCu -3'
miRNA:   3'- gaUGCGGCU-----------AGGUUGCG--ACGG--GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 15256 0.73 0.270996
Target:  5'- --gUGCCGGUCCAuGCGCUGUCaCGGUa -3'
miRNA:   3'- gauGCGGCUAGGU-UGCGACGG-GUCGg -5'
18239 3' -57.1 NC_004680.1 + 32020 0.73 0.284824
Target:  5'- -cACGaugCGAUCCAACGCauacugcGCaCCAGCCg -3'
miRNA:   3'- gaUGCg--GCUAGGUUGCGa------CG-GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 12787 0.73 0.284824
Target:  5'- -gGCGCCGAUCgCGGCGa--CCUGGCCg -3'
miRNA:   3'- gaUGCGGCUAG-GUUGCgacGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 11169 0.72 0.299202
Target:  5'- -gGCGCCGGggccgccaCCAAgGCcGCCCGGCa -3'
miRNA:   3'- gaUGCGGCUa-------GGUUgCGaCGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 33687 0.72 0.3066
Target:  5'- uCUGC-CCGAaCCGucacCGCUGuCCCGGCCc -3'
miRNA:   3'- -GAUGcGGCUaGGUu---GCGAC-GGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 10361 0.71 0.327268
Target:  5'- -aACGCUGAUCCGggcgguugagaagaAUGCUGCCgGGUUc -3'
miRNA:   3'- gaUGCGGCUAGGU--------------UGCGACGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 59262 0.71 0.327268
Target:  5'- -aACGCCuGAUCgAACGCgGCCCgaaaguuagcuggcGGCCc -3'
miRNA:   3'- gaUGCGG-CUAGgUUGCGaCGGG--------------UCGG- -5'
18239 3' -57.1 NC_004680.1 + 42444 0.71 0.357238
Target:  5'- aUGCGCCGAgaUCGugGcCUGCCCaacacccaaagugcgGGCCa -3'
miRNA:   3'- gAUGCGGCUa-GGUugC-GACGGG---------------UCGG- -5'
18239 3' -57.1 NC_004680.1 + 47580 0.71 0.362275
Target:  5'- gUGCGCCgccuacGAUCCGugGUUuCCuCAGCCg -3'
miRNA:   3'- gAUGCGG------CUAGGUugCGAcGG-GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 27386 0.71 0.362275
Target:  5'- uUGCGUCGAcaCCGACcguGCUGCCUGGUCc -3'
miRNA:   3'- gAUGCGGCUa-GGUUG---CGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 29579 0.71 0.362275
Target:  5'- uCUugGCCGAUCUugcagguuuggAGCcccgcacCUGCCCAGCa -3'
miRNA:   3'- -GAugCGGCUAGG-----------UUGc------GACGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 861 0.71 0.368215
Target:  5'- -gGCGCCGGUUCGgugugacggguuugACGCUG-CCGGCa -3'
miRNA:   3'- gaUGCGGCUAGGU--------------UGCGACgGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.