miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18240 5' -58.7 NC_004680.1 + 45175 0.66 0.569476
Target:  5'- gGUCUcgGCgGCUCUcgccgCGACGaCACCAACg -3'
miRNA:   3'- aCAGG--CG-CGAGGa----GCUGCgGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 4297 0.66 0.558927
Target:  5'- cGUCCGcCGCggUCUgCGAUGuCCGCgAACg -3'
miRNA:   3'- aCAGGC-GCGa-GGA-GCUGC-GGUGgUUG- -5'
18240 5' -58.7 NC_004680.1 + 17997 0.66 0.548434
Target:  5'- -aUCCGCGUU-CUCG-C-CCACCGACc -3'
miRNA:   3'- acAGGCGCGAgGAGCuGcGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 57145 0.66 0.548434
Target:  5'- gUGUUCGaCGaauggcacggaUUCCcCGGCGCCGCCGAg -3'
miRNA:   3'- -ACAGGC-GC-----------GAGGaGCUGCGGUGGUUg -5'
18240 5' -58.7 NC_004680.1 + 32387 0.66 0.546343
Target:  5'- gGUCCGCGCcauuucgugcggCCgUCGuCGCUGCgGGCg -3'
miRNA:   3'- aCAGGCGCGa-----------GG-AGCuGCGGUGgUUG- -5'
18240 5' -58.7 NC_004680.1 + 39824 0.66 0.538003
Target:  5'- aUG-CgGCGCUCCaugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5'
18240 5' -58.7 NC_004680.1 + 39776 0.66 0.538003
Target:  5'- aUG-CgGCGCUCCaugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5'
18240 5' -58.7 NC_004680.1 + 39860 0.66 0.538003
Target:  5'- aUG-CgGCGCUCCaugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5'
18240 5' -58.7 NC_004680.1 + 39680 0.66 0.538003
Target:  5'- aUG-CgGCGCUCCaugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5'
18240 5' -58.7 NC_004680.1 + 353 0.66 0.536964
Target:  5'- aGUCUGUGUacUCCggugccaucggCGACGCCcaaaugucauuccACCAGCg -3'
miRNA:   3'- aCAGGCGCG--AGGa----------GCUGCGG-------------UGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 8320 0.66 0.527642
Target:  5'- gGUCUuggaaCGCUgCUUCGACGCCuggucguCCAGCu -3'
miRNA:   3'- aCAGGc----GCGA-GGAGCUGCGGu------GGUUG- -5'
18240 5' -58.7 NC_004680.1 + 5353 0.66 0.517355
Target:  5'- --cCCGUGCgggugCCaCGGCccugGCCACCGACa -3'
miRNA:   3'- acaGGCGCGa----GGaGCUG----CGGUGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 39957 0.67 0.497031
Target:  5'- aGUgCgGCGCUCCaugCGGCGCucuCugCGGCg -3'
miRNA:   3'- aCA-GgCGCGAGGa--GCUGCG---GugGUUG- -5'
18240 5' -58.7 NC_004680.1 + 2774 0.67 0.497031
Target:  5'- cGUCCGUGCUUUgugcagUCGuCGUC-CCGGCg -3'
miRNA:   3'- aCAGGCGCGAGG------AGCuGCGGuGGUUG- -5'
18240 5' -58.7 NC_004680.1 + 5657 0.67 0.487004
Target:  5'- gUGUCCGCGCUggucagCUUCGAC-CCggACgAACg -3'
miRNA:   3'- -ACAGGCGCGA------GGAGCUGcGG--UGgUUG- -5'
18240 5' -58.7 NC_004680.1 + 48451 0.67 0.487004
Target:  5'- --aCCGCGaCUCCUCGugGaaCC-CCAAg -3'
miRNA:   3'- acaGGCGC-GAGGAGCugC--GGuGGUUg -5'
18240 5' -58.7 NC_004680.1 + 39920 0.67 0.477074
Target:  5'- cUG-CgGCGCUCCgugCGGCGCucuCugCGGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCG---GugGUUG- -5'
18240 5' -58.7 NC_004680.1 + 43109 0.67 0.467244
Target:  5'- gGUCgGCGUUCacgCUCGGacagGCCGCCGAa -3'
miRNA:   3'- aCAGgCGCGAG---GAGCUg---CGGUGGUUg -5'
18240 5' -58.7 NC_004680.1 + 31493 0.67 0.457521
Target:  5'- gUGaCCGUGCUcCCUCcACGCgGCCAc- -3'
miRNA:   3'- -ACaGGCGCGA-GGAGcUGCGgUGGUug -5'
18240 5' -58.7 NC_004680.1 + 39716 0.68 0.447907
Target:  5'- cUG-CgGCGCUCCgugCGGCGCUcCCuGCg -3'
miRNA:   3'- -ACaGgCGCGAGGa--GCUGCGGuGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.