Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18244 | 5' | -55.6 | NC_004680.1 | + | 39907 | 0.69 | 0.519434 |
Target: 5'- uGCGGcgCucuCUGCGGCGCUcCCUGCGg -3' miRNA: 3'- -CGUCaaGuu-GGCGUCGCGGcGGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 39943 | 0.69 | 0.519434 |
Target: 5'- uGCGGcgCucuCUGCGGCGCUcCCUGCGg -3' miRNA: 3'- -CGUCaaGuu-GGCGUCGCGGcGGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 21453 | 0.69 | 0.488235 |
Target: 5'- -aAGUaC-ACCGcCGGCGCCGCCaUACGu -3' miRNA: 3'- cgUCAaGuUGGC-GUCGCGGCGG-AUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 27360 | 0.7 | 0.43832 |
Target: 5'- -aGGUucUCGGCgGCAGCGUCGCCg--- -3' miRNA: 3'- cgUCA--AGUUGgCGUCGCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 42781 | 0.75 | 0.226779 |
Target: 5'- cGCGGUUCGACUGCAccccacCGUCGCCgcgGCAu -3' miRNA: 3'- -CGUCAAGUUGGCGUc-----GCGGCGGa--UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 29103 | 0.67 | 0.649805 |
Target: 5'- aGUAGgUCAACCGCGcccGCGCCGagugugGCGa -3' miRNA: 3'- -CGUCaAGUUGGCGU---CGCGGCgga---UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 24707 | 0.67 | 0.649805 |
Target: 5'- uCGGUU--ACCGCAGCcCCGCCgagACc -3' miRNA: 3'- cGUCAAguUGGCGUCGcGGCGGa--UGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 30836 | 0.66 | 0.725743 |
Target: 5'- cGUAGUgcgCGACCuGcCAGcCGUCGcCCUGCGc -3' miRNA: 3'- -CGUCAa--GUUGG-C-GUC-GCGGC-GGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 5681 | 0.66 | 0.715084 |
Target: 5'- cGCAG----ACCaGCAGCGUCGCCg--- -3' miRNA: 3'- -CGUCaaguUGG-CGUCGCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 27800 | 0.66 | 0.704343 |
Target: 5'- gGCGGUUCAgguucggucuuGCCGCca-GCCGCCc--- -3' miRNA: 3'- -CGUCAAGU-----------UGGCGucgCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 6387 | 0.66 | 0.704343 |
Target: 5'- aCGGcccuGCCGuCAGCGauaCCGCCUGCGa -3' miRNA: 3'- cGUCaaguUGGC-GUCGC---GGCGGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 26180 | 0.66 | 0.704343 |
Target: 5'- gGC-GUUcCAGCCgGCGGgGCCGCgggaCUGCAc -3' miRNA: 3'- -CGuCAA-GUUGG-CGUCgCGGCG----GAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 59235 | 0.66 | 0.682662 |
Target: 5'- cGCAGguugUCGAgUGUgucuGCGCCGCC-GCGu -3' miRNA: 3'- -CGUCa---AGUUgGCGu---CGCGGCGGaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 15268 | 0.66 | 0.682662 |
Target: 5'- cGCAGUUCAGCgGUGccgguccauGCGCUGUC-ACGg -3' miRNA: 3'- -CGUCAAGUUGgCGU---------CGCGGCGGaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 25901 | 0.66 | 0.682662 |
Target: 5'- gGCGGccgCcGCCGCAGUGCCGaacGCAc -3' miRNA: 3'- -CGUCaa-GuUGGCGUCGCGGCggaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 30611 | 0.66 | 0.671743 |
Target: 5'- cGCAGUUgGugCaGCGGCGCauCGUgUACGu -3' miRNA: 3'- -CGUCAAgUugG-CGUCGCG--GCGgAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 55594 | 0.67 | 0.660787 |
Target: 5'- cGCGGUgccCGGuuGguGCGUCGgCUGCu -3' miRNA: 3'- -CGUCAa--GUUggCguCGCGGCgGAUGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 29163 | 0.8 | 0.111443 |
Target: 5'- aGCAGUgaCAccACUGCGGCGCCGCCggACAc -3' miRNA: 3'- -CGUCAa-GU--UGGCGUCGCGGCGGa-UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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