miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18244 5' -55.6 NC_004680.1 + 57427 1.11 0.000688
Target:  5'- aGCAGUUCAACCGCAGCGCCGCCUACAa -3'
miRNA:   3'- -CGUCAAGUUGGCGUCGCGGCGGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 36411 0.66 0.693532
Target:  5'- -aGGUU--GCCGCGGCGCaGaCCUACu -3'
miRNA:   3'- cgUCAAguUGGCGUCGCGgC-GGAUGu -5'
18244 5' -55.6 NC_004680.1 + 26090 0.66 0.693532
Target:  5'- uGCAGUc---CCGCGGCcCCGCCgGCu -3'
miRNA:   3'- -CGUCAaguuGGCGUCGcGGCGGaUGu -5'
18244 5' -55.6 NC_004680.1 + 43720 0.66 0.671743
Target:  5'- uGCAGUUCcugGACCGCgaAGCGCUGgaguugaaCCUGg- -3'
miRNA:   3'- -CGUCAAG---UUGGCG--UCGCGGC--------GGAUgu -5'
18244 5' -55.6 NC_004680.1 + 9084 0.67 0.660787
Target:  5'- gGCGGUUUuucgGGCUG-AGCGUCGCCgauugGCAu -3'
miRNA:   3'- -CGUCAAG----UUGGCgUCGCGGCGGa----UGU- -5'
18244 5' -55.6 NC_004680.1 + 16165 0.67 0.660787
Target:  5'- aGCGGUUCuauccgacAGCCuCGGCGCCGUacaACAu -3'
miRNA:   3'- -CGUCAAG--------UUGGcGUCGCGGCGga-UGU- -5'
18244 5' -55.6 NC_004680.1 + 25230 0.67 0.627801
Target:  5'- aGCGGUUCGggucACCaGCGGCGCggaguugguacaCGCgCUGCu -3'
miRNA:   3'- -CGUCAAGU----UGG-CGUCGCG------------GCG-GAUGu -5'
18244 5' -55.6 NC_004680.1 + 35373 0.67 0.6168
Target:  5'- aGC-GUUgAGCCGCGGgGCCGCg---- -3'
miRNA:   3'- -CGuCAAgUUGGCGUCgCGGCGgaugu -5'
18244 5' -55.6 NC_004680.1 + 9580 0.69 0.53001
Target:  5'- gGCGGUUCGGCUGCuG-GCCGCgCgaucgGCGa -3'
miRNA:   3'- -CGUCAAGUUGGCGuCgCGGCG-Ga----UGU- -5'
18244 5' -55.6 NC_004680.1 + 42598 0.74 0.278723
Target:  5'- gGCA--UCAGCCGCGGCGaaGCCcACAa -3'
miRNA:   3'- -CGUcaAGUUGGCGUCGCggCGGaUGU- -5'
18244 5' -55.6 NC_004680.1 + 11782 0.72 0.36495
Target:  5'- cGguGUgUCcauGACCGCucuccccggGGCGCCGUCUGCAa -3'
miRNA:   3'- -CguCA-AG---UUGGCG---------UCGCGGCGGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 38280 0.71 0.42869
Target:  5'- aGCAGUagaAGCCGCAGCGCgUGCgUGgGa -3'
miRNA:   3'- -CGUCAag-UUGGCGUCGCG-GCGgAUgU- -5'
18244 5' -55.6 NC_004680.1 + 7694 0.69 0.519434
Target:  5'- cGguGUUCAuccgcgacaACCGUGGUGCCGCg-ACGg -3'
miRNA:   3'- -CguCAAGU---------UGGCGUCGCGGCGgaUGU- -5'
18244 5' -55.6 NC_004680.1 + 38229 0.69 0.519434
Target:  5'- -----cCAGCCuGCGGUGCCGgCUACAa -3'
miRNA:   3'- cgucaaGUUGG-CGUCGCGGCgGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 42709 0.69 0.519434
Target:  5'- uGCAGUcgAACCGCGuuGCGCCGCa---- -3'
miRNA:   3'- -CGUCAagUUGGCGU--CGCGGCGgaugu -5'
18244 5' -55.6 NC_004680.1 + 29163 0.8 0.111443
Target:  5'- aGCAGUgaCAccACUGCGGCGCCGCCggACAc -3'
miRNA:   3'- -CGUCAa-GU--UGGCGUCGCGGCGGa-UGU- -5'
18244 5' -55.6 NC_004680.1 + 5681 0.66 0.715084
Target:  5'- cGCAG----ACCaGCAGCGUCGCCg--- -3'
miRNA:   3'- -CGUCaaguUGG-CGUCGCGGCGGaugu -5'
18244 5' -55.6 NC_004680.1 + 27800 0.66 0.704343
Target:  5'- gGCGGUUCAgguucggucuuGCCGCca-GCCGCCc--- -3'
miRNA:   3'- -CGUCAAGU-----------UGGCGucgCGGCGGaugu -5'
18244 5' -55.6 NC_004680.1 + 6387 0.66 0.704343
Target:  5'- aCGGcccuGCCGuCAGCGauaCCGCCUGCGa -3'
miRNA:   3'- cGUCaaguUGGC-GUCGC---GGCGGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 26180 0.66 0.704343
Target:  5'- gGC-GUUcCAGCCgGCGGgGCCGCgggaCUGCAc -3'
miRNA:   3'- -CGuCAA-GUUGG-CGUCgCGGCG----GAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.