Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18244 | 5' | -55.6 | NC_004680.1 | + | 5028 | 0.67 | 0.605813 |
Target: 5'- cGCucgUCAgGCgGCAGCGCCGCaUACu -3' miRNA: 3'- -CGucaAGU-UGgCGUCGCGGCGgAUGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 5681 | 0.66 | 0.715084 |
Target: 5'- cGCAG----ACCaGCAGCGUCGCCg--- -3' miRNA: 3'- -CGUCaaguUGG-CGUCGCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 6387 | 0.66 | 0.704343 |
Target: 5'- aCGGcccuGCCGuCAGCGauaCCGCCUGCGa -3' miRNA: 3'- cGUCaaguUGGC-GUCGC---GGCGGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 7694 | 0.69 | 0.519434 |
Target: 5'- cGguGUUCAuccgcgacaACCGUGGUGCCGCg-ACGg -3' miRNA: 3'- -CguCAAGU---------UGGCGUCGCGGCGgaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 9084 | 0.67 | 0.660787 |
Target: 5'- gGCGGUUUuucgGGCUG-AGCGUCGCCgauugGCAu -3' miRNA: 3'- -CGUCAAG----UUGGCgUCGCGGCGGa----UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 9580 | 0.69 | 0.53001 |
Target: 5'- gGCGGUUCGGCUGCuG-GCCGCgCgaucgGCGa -3' miRNA: 3'- -CGUCAAGUUGGCGuCgCGGCG-Ga----UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 11237 | 0.68 | 0.562177 |
Target: 5'- gGCAGaaucgggUCAcCCGCAGgGCUGCCa--- -3' miRNA: 3'- -CGUCa------AGUuGGCGUCgCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 11782 | 0.72 | 0.36495 |
Target: 5'- cGguGUgUCcauGACCGCucuccccggGGCGCCGUCUGCAa -3' miRNA: 3'- -CguCA-AG---UUGGCG---------UCGCGGCGGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 15268 | 0.66 | 0.682662 |
Target: 5'- cGCAGUUCAGCgGUGccgguccauGCGCUGUC-ACGg -3' miRNA: 3'- -CGUCAAGUUGgCGU---------CGCGGCGGaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 16165 | 0.67 | 0.660787 |
Target: 5'- aGCGGUUCuauccgacAGCCuCGGCGCCGUacaACAu -3' miRNA: 3'- -CGUCAAG--------UUGGcGUCGCGGCGga-UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 19676 | 0.67 | 0.627801 |
Target: 5'- aGCGGUac--CCGCcGCGCCGCCcucagcgACAa -3' miRNA: 3'- -CGUCAaguuGGCGuCGCGGCGGa------UGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 21453 | 0.69 | 0.488235 |
Target: 5'- -aAGUaC-ACCGcCGGCGCCGCCaUACGu -3' miRNA: 3'- cgUCAaGuUGGC-GUCGCGGCGG-AUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 22403 | 0.67 | 0.638806 |
Target: 5'- cGCGGUaauACCGCuccGCGCCGgacauuccaaCCUGCGg -3' miRNA: 3'- -CGUCAaguUGGCGu--CGCGGC----------GGAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 24707 | 0.67 | 0.649805 |
Target: 5'- uCGGUU--ACCGCAGCcCCGCCgagACc -3' miRNA: 3'- cGUCAAguUGGCGUCGcGGCGGa--UGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 25230 | 0.67 | 0.627801 |
Target: 5'- aGCGGUUCGggucACCaGCGGCGCggaguugguacaCGCgCUGCu -3' miRNA: 3'- -CGUCAAGU----UGG-CGUCGCG------------GCG-GAUGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 25901 | 0.66 | 0.682662 |
Target: 5'- gGCGGccgCcGCCGCAGUGCCGaacGCAc -3' miRNA: 3'- -CGUCaa-GuUGGCGUCGCGGCggaUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 26090 | 0.66 | 0.693532 |
Target: 5'- uGCAGUc---CCGCGGCcCCGCCgGCu -3' miRNA: 3'- -CGUCAaguuGGCGUCGcGGCGGaUGu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 26180 | 0.66 | 0.704343 |
Target: 5'- gGC-GUUcCAGCCgGCGGgGCCGCgggaCUGCAc -3' miRNA: 3'- -CGuCAA-GUUGG-CGUCgCGGCG----GAUGU- -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 27360 | 0.7 | 0.43832 |
Target: 5'- -aGGUucUCGGCgGCAGCGUCGCCg--- -3' miRNA: 3'- cgUCA--AGUUGgCGUCGCGGCGGaugu -5' |
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18244 | 5' | -55.6 | NC_004680.1 | + | 27800 | 0.66 | 0.704343 |
Target: 5'- gGCGGUUCAgguucggucuuGCCGCca-GCCGCCc--- -3' miRNA: 3'- -CGUCAAGU-----------UGGCGucgCGGCGGaugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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