miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 11320 0.68 0.512244
Target:  5'- uGCCCGccACaaACUGGCGGagaagcguGC-CCGCGCCg -3'
miRNA:   3'- uUGGGU--UG--UGGCCGCU--------UGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11820 0.66 0.618873
Target:  5'- cAACCCccgggcaguCGCCGcGCG-ACUUCGCGCa -3'
miRNA:   3'- -UUGGGuu-------GUGGC-CGCuUGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 12322 0.69 0.481629
Target:  5'- --aCCGACACCGGaa----CCACGCCa -3'
miRNA:   3'- uugGGUUGUGGCCgcuugaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 12340 0.66 0.629735
Target:  5'- gGugCC-GCGCCGGgGAGuC-CCGCGUCu -3'
miRNA:   3'- -UugGGuUGUGGCCgCUU-GaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 12440 0.68 0.498873
Target:  5'- uGCCCAcCACCGGUGGugGCggcggCCcgauggcugccgguGCGCCa -3'
miRNA:   3'- uUGGGUuGUGGCCGCU--UGa----GG--------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 12459 0.74 0.225358
Target:  5'- gAGCCgGAC-CCGGCaguGGAC-CCGCGCCa -3'
miRNA:   3'- -UUGGgUUGuGGCCG---CUUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 12615 0.69 0.47162
Target:  5'- gAACCCGAauaCGGUGcAACgUUCGCGCCg -3'
miRNA:   3'- -UUGGGUUgugGCCGC-UUG-AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 12641 0.69 0.491738
Target:  5'- cACCCGGCGCUGGUcagg-CCGCGCa -3'
miRNA:   3'- uUGGGUUGUGGCCGcuugaGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 12712 0.66 0.662297
Target:  5'- --aCCAGCGCCgGGUGccaucgcguccAGCgCCAUGCCg -3'
miRNA:   3'- uugGGUUGUGG-CCGC-----------UUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 13409 0.66 0.673109
Target:  5'- cACCCAcgacaugggGCACUGGUGGGCaCCGgucCGCUg -3'
miRNA:   3'- uUGGGU---------UGUGGCCGCUUGaGGU---GCGG- -5'
18246 3' -56.8 NC_004680.1 + 14096 0.7 0.404759
Target:  5'- --aCCGGCACCGGUaguGAACUCgGC-CCg -3'
miRNA:   3'- uugGGUUGUGGCCG---CUUGAGgUGcGG- -5'
18246 3' -56.8 NC_004680.1 + 14751 0.7 0.404759
Target:  5'- cGGCCCGAUACCucggugaggGGUGAAUUUguggCGCGCCu -3'
miRNA:   3'- -UUGGGUUGUGG---------CCGCUUGAG----GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 15908 0.69 0.491738
Target:  5'- cACCCAcCGCgGGCGcAUaaaacacgccgUCCAUGCCg -3'
miRNA:   3'- uUGGGUuGUGgCCGCuUG-----------AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 15976 0.69 0.491738
Target:  5'- cGCaUCGACACCGGUGuccucacccGGCUCagGCGCCa -3'
miRNA:   3'- uUG-GGUUGUGGCCGC---------UUGAGg-UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 16789 0.8 0.089304
Target:  5'- cGACCCGACACCGGCGGAa---GCGUCg -3'
miRNA:   3'- -UUGGGUUGUGGCCGCUUgaggUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 17185 0.67 0.586389
Target:  5'- uAACCgGACACgCGGggccgccaauCGAACggCUGCGCCg -3'
miRNA:   3'- -UUGGgUUGUG-GCC----------GCUUGa-GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 18433 0.66 0.628649
Target:  5'- cAACCCAcgacugcugaauaACACCGGUcugcuuGAcCUCgGCGUCa -3'
miRNA:   3'- -UUGGGU-------------UGUGGCCG------CUuGAGgUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 18602 0.68 0.501945
Target:  5'- gGACCCAGCauGCCaGCGAucgACUCCggggagauguuGCGCa -3'
miRNA:   3'- -UUGGGUUG--UGGcCGCU---UGAGG-----------UGCGg -5'
18246 3' -56.8 NC_004680.1 + 18681 0.67 0.575624
Target:  5'- cGCaCCAACACCGG-GAAggcCUaCCAgGCCc -3'
miRNA:   3'- uUG-GGUUGUGGCCgCUU---GA-GGUgCGG- -5'
18246 3' -56.8 NC_004680.1 + 19395 0.66 0.673109
Target:  5'- cACCCAguucgGCACCGG-GAACaccguggCCGCgguGCCa -3'
miRNA:   3'- uUGGGU-----UGUGGCCgCUUGa------GGUG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.