miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 589 0.67 0.575624
Target:  5'- aGGCuCCGgugggcACACCGGCGcagccuccGACUUC-CGCCg -3'
miRNA:   3'- -UUG-GGU------UGUGGCCGC--------UUGAGGuGCGG- -5'
18246 3' -56.8 NC_004680.1 + 896 0.66 0.6406
Target:  5'- aAAUCC-ACGCC-GCGAACUCggucuuggcUACGCCc -3'
miRNA:   3'- -UUGGGuUGUGGcCGCUUGAG---------GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 943 0.68 0.522629
Target:  5'- aAACCCGucacaccgaACCGGCGccuccgggugcAGCUCCACaCCg -3'
miRNA:   3'- -UUGGGUug-------UGGCCGC-----------UUGAGGUGcGG- -5'
18246 3' -56.8 NC_004680.1 + 1624 0.66 0.662297
Target:  5'- uAUCgAACGCCuGCGAGC-CCgacuuACGCCa -3'
miRNA:   3'- uUGGgUUGUGGcCGCUUGaGG-----UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 1930 0.69 0.451928
Target:  5'- cAACCCGAUccgggaACCGGCccGC-CCACGCg -3'
miRNA:   3'- -UUGGGUUG------UGGCCGcuUGaGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 2460 0.7 0.432693
Target:  5'- cGCCUcACGCUGaaaCGAACgCCACGCCg -3'
miRNA:   3'- uUGGGuUGUGGCc--GCUUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 3180 0.67 0.57455
Target:  5'- uAUUCGACAgcugucgUCGGCGAccaagACUCCGCuGCCg -3'
miRNA:   3'- uUGGGUUGU-------GGCCGCU-----UGAGGUG-CGG- -5'
18246 3' -56.8 NC_004680.1 + 3634 0.71 0.37799
Target:  5'- cACCgGAuUGCCGGCGAacaggguuaucuGCUCaCGCGCCc -3'
miRNA:   3'- uUGGgUU-GUGGCCGCU------------UGAG-GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 5685 0.66 0.623217
Target:  5'- cGCCCGcagaccagcagcguCGCCGGaaGugUCCGCGCUg -3'
miRNA:   3'- uUGGGUu-------------GUGGCCgcUugAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 7089 0.7 0.42232
Target:  5'- cGACCCGaacuccacgagauGCGCCuGCGGAUcagUCGCGCCg -3'
miRNA:   3'- -UUGGGU-------------UGUGGcCGCUUGa--GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 7241 0.67 0.593947
Target:  5'- cACCCGACAagCGGCGggUagaaaccuuUCCcagaggggacagccACGCCa -3'
miRNA:   3'- uUGGGUUGUg-GCCGCuuG---------AGG--------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 8316 0.69 0.47162
Target:  5'- cGGCCCGAC-CCGGCGGGaaCgAuCGCCc -3'
miRNA:   3'- -UUGGGUUGuGGCCGCUUgaGgU-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 9639 0.66 0.6406
Target:  5'- gGGCCgUAACGCUGGUGAGCaguugUCGCGUg -3'
miRNA:   3'- -UUGG-GUUGUGGCCGCUUGa----GGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 9935 0.78 0.128321
Target:  5'- uACCCAACGCgCGGCcAGCcaCCGCGCCa -3'
miRNA:   3'- uUGGGUUGUG-GCCGcUUGa-GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 10384 0.71 0.352437
Target:  5'- cAGCUCAGCGCCcGUGAcguucaGCUCCuuCGCCa -3'
miRNA:   3'- -UUGGGUUGUGGcCGCU------UGAGGu-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 10788 0.68 0.521586
Target:  5'- cGCCUucCACgCGGCGAACgcgCCcacaacaucgccgACGCCa -3'
miRNA:   3'- uUGGGuuGUG-GCCGCUUGa--GG-------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11011 0.7 0.423257
Target:  5'- gAACCCA--ACCGGgGAACaggcggUCCuCGCCg -3'
miRNA:   3'- -UUGGGUugUGGCCgCUUG------AGGuGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11037 0.66 0.618873
Target:  5'- -cCCCGGCcCCGuCGAuguCUCC-CGCCg -3'
miRNA:   3'- uuGGGUUGuGGCcGCUu--GAGGuGCGG- -5'
18246 3' -56.8 NC_004680.1 + 11101 0.67 0.608022
Target:  5'- -cCCCGGCGCCcaaGCaGAACgCCGCgGCCg -3'
miRNA:   3'- uuGGGUUGUGGc--CG-CUUGaGGUG-CGG- -5'
18246 3' -56.8 NC_004680.1 + 11296 0.66 0.618873
Target:  5'- ---gCAACACCGGUGcauccggcAACUUCGgGCCa -3'
miRNA:   3'- uuggGUUGUGGCCGC--------UUGAGGUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.