miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 32375 0.68 0.533094
Target:  5'- aAGCCgGACACUGGU-----CCGCGCCa -3'
miRNA:   3'- -UUGGgUUGUGGCCGcuugaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 8316 0.69 0.47162
Target:  5'- cGGCCCGAC-CCGGCGGGaaCgAuCGCCc -3'
miRNA:   3'- -UUGGGUUGuGGCCGCUUgaGgU-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 12641 0.69 0.491738
Target:  5'- cACCCGGCGCUGGUcagg-CCGCGCa -3'
miRNA:   3'- uUGGGUUGUGGCCGcuugaGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 12440 0.68 0.498873
Target:  5'- uGCCCAcCACCGGUGGugGCggcggCCcgauggcugccgguGCGCCa -3'
miRNA:   3'- uUGGGUuGUGGCCGCU--UGa----GG--------------UGCGG- -5'
18246 3' -56.8 NC_004680.1 + 49860 0.68 0.512244
Target:  5'- cAGCgCCGACAUCGGCGGACguuaaaCCugGa- -3'
miRNA:   3'- -UUG-GGUUGUGGCCGCUUGa-----GGugCgg -5'
18246 3' -56.8 NC_004680.1 + 11320 0.68 0.512244
Target:  5'- uGCCCGccACaaACUGGCGGagaagcguGC-CCGCGCCg -3'
miRNA:   3'- uUGGGU--UG--UGGCCGCU--------UGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 28254 0.68 0.522629
Target:  5'- -cCCCGACGCCGaCaccGC-CCGCGCCg -3'
miRNA:   3'- uuGGGUUGUGGCcGcu-UGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 46063 0.68 0.522629
Target:  5'- cGCCCAACACUucauccGCcGACaCCACGCCc -3'
miRNA:   3'- uUGGGUUGUGGc-----CGcUUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 57329 0.68 0.522629
Target:  5'- gGAUCCAcGCcgGCCGGCGAACcugaaaCGCGUCa -3'
miRNA:   3'- -UUGGGU-UG--UGGCCGCUUGag----GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 58176 0.69 0.442252
Target:  5'- cGAUgCAAUACCGuGCaacaacuuccgaGAccaGCUCCACGCCg -3'
miRNA:   3'- -UUGgGUUGUGGC-CG------------CU---UGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 49123 0.7 0.432693
Target:  5'- aAGCCCGGCACucuaagccgcgaCGGCGAggucgcuaaauGCUCUGCGUg -3'
miRNA:   3'- -UUGGGUUGUG------------GCCGCU-----------UGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 25674 0.7 0.413944
Target:  5'- cGGCaCCGGCACCGGCcucauCUacaaaCACGCCu -3'
miRNA:   3'- -UUG-GGUUGUGGCCGcuu--GAg----GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 16789 0.8 0.089304
Target:  5'- cGACCCGACACCGGCGGAa---GCGUCg -3'
miRNA:   3'- -UUGGGUUGUGGCCGCUUgaggUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 58316 0.77 0.159651
Target:  5'- cAGCCCAcugGCucaccuGCCGGCGccuACUCCACGCa -3'
miRNA:   3'- -UUGGGU---UG------UGGCCGCu--UGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 26682 0.73 0.265442
Target:  5'- aGGCCCGcuacGCACCcGCGAACaggucgcccgcgaagUCCACGCUg -3'
miRNA:   3'- -UUGGGU----UGUGGcCGCUUG---------------AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 53165 0.73 0.275636
Target:  5'- aGACCCugacgAAUAUCgGGCGuucugccAGCUCCACGCCg -3'
miRNA:   3'- -UUGGG-----UUGUGG-CCGC-------UUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 36960 0.7 0.404759
Target:  5'- uGACCCGGCAugaaguucuCCGGUGAAUaccuguaccgggUCCGCGUg -3'
miRNA:   3'- -UUGGGUUGU---------GGCCGCUUG------------AGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 14096 0.7 0.404759
Target:  5'- --aCCGGCACCGGUaguGAACUCgGC-CCg -3'
miRNA:   3'- uugGGUUGUGGCCG---CUUGAGgUGcGG- -5'
18246 3' -56.8 NC_004680.1 + 14751 0.7 0.404759
Target:  5'- cGGCCCGAUACCucggugaggGGUGAAUUUguggCGCGCCu -3'
miRNA:   3'- -UUGGGUUGUGG---------CCGCUUGAG----GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 23166 0.7 0.412097
Target:  5'- gGGCaCCAACACCGGCGAcgagguugaaauCUCCgugGCGgCa -3'
miRNA:   3'- -UUG-GGUUGUGGCCGCUu-----------GAGG---UGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.