miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 59097 1.1 0.000655
Target:  5'- cAACCCAACACCGGCGAACUCCACGCCg -3'
miRNA:   3'- -UUGGGUUGUGGCCGCUUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 47930 0.81 0.085363
Target:  5'- cGACCCGGCcaaccgccgcagccaGCCGGCGcuccAACUCCGCGUCa -3'
miRNA:   3'- -UUGGGUUG---------------UGGCCGC----UUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 16789 0.8 0.089304
Target:  5'- cGACCCGACACCGGCGGAa---GCGUCg -3'
miRNA:   3'- -UUGGGUUGUGGCCGCUUgaggUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 9935 0.78 0.128321
Target:  5'- uACCCAACGCgCGGCcAGCcaCCGCGCCa -3'
miRNA:   3'- uUGGGUUGUG-GCCGcUUGa-GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 37061 0.77 0.147165
Target:  5'- gGACCCGGuacagguauuCACCGGaGAACUUCAUGCCg -3'
miRNA:   3'- -UUGGGUU----------GUGGCCgCUUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 58316 0.77 0.159651
Target:  5'- cAGCCCAcugGCucaccuGCCGGCGccuACUCCACGCa -3'
miRNA:   3'- -UUGGGU---UG------UGGCCGCu--UGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 30887 0.75 0.203
Target:  5'- cACCCAAguccauccgguCGCCGGUGAuccGCUCCAaGCCg -3'
miRNA:   3'- uUGGGUU-----------GUGGCCGCU---UGAGGUgCGG- -5'
18246 3' -56.8 NC_004680.1 + 12459 0.74 0.225358
Target:  5'- gAGCCgGAC-CCGGCaguGGAC-CCGCGCCa -3'
miRNA:   3'- -UUGGgUUGuGGCCG---CUUGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 48423 0.74 0.231265
Target:  5'- aAACUCGACAUgcgCGGUGAugUCCGuCGCCc -3'
miRNA:   3'- -UUGGGUUGUG---GCCGCUugAGGU-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 39607 0.74 0.236692
Target:  5'- cGCCCGGCgaugcaaAUCGGCGAucucacggaucGCUaCCGCGCCa -3'
miRNA:   3'- uUGGGUUG-------UGGCCGCU-----------UGA-GGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 26682 0.73 0.265442
Target:  5'- aGGCCCGcuacGCACCcGCGAACaggucgcccgcgaagUCCACGCUg -3'
miRNA:   3'- -UUGGGU----UGUGGcCGCUUG---------------AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 53165 0.73 0.275636
Target:  5'- aGACCCugacgAAUAUCgGGCGuucugccAGCUCCACGCCg -3'
miRNA:   3'- -UUGGG-----UUGUGG-CCGC-------UUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 48301 0.73 0.290429
Target:  5'- -uUCCGucGCGCCGGCGAGCcaaccgaaccuUCCACuuGCCg -3'
miRNA:   3'- uuGGGU--UGUGGCCGCUUG-----------AGGUG--CGG- -5'
18246 3' -56.8 NC_004680.1 + 25443 0.72 0.328132
Target:  5'- cGCCgCGACuACCGcCGAGCUUgACGCCg -3'
miRNA:   3'- uUGG-GUUG-UGGCcGCUUGAGgUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 36539 0.71 0.344196
Target:  5'- -gUCCggaAugGCCGGCuGAACUCCGCuuGCCg -3'
miRNA:   3'- uuGGG---UugUGGCCG-CUUGAGGUG--CGG- -5'
18246 3' -56.8 NC_004680.1 + 10384 0.71 0.352437
Target:  5'- cAGCUCAGCGCCcGUGAcguucaGCUCCuuCGCCa -3'
miRNA:   3'- -UUGGGUUGUGGcCGCU------UGAGGu-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 29786 0.71 0.37799
Target:  5'- gGACCCGcaacACAUCGGUGAAC-CUAacguCGCCg -3'
miRNA:   3'- -UUGGGU----UGUGGCCGCUUGaGGU----GCGG- -5'
18246 3' -56.8 NC_004680.1 + 3634 0.71 0.37799
Target:  5'- cACCgGAuUGCCGGCGAacaggguuaucuGCUCaCGCGCCc -3'
miRNA:   3'- uUGGgUU-GUGGCCGCU------------UGAG-GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 29119 0.7 0.403848
Target:  5'- cACCCAAuCGgUGGCGAguaggucaaccgcGC-CCGCGCCg -3'
miRNA:   3'- uUGGGUU-GUgGCCGCU-------------UGaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 36960 0.7 0.404759
Target:  5'- uGACCCGGCAugaaguucuCCGGUGAAUaccuguaccgggUCCGCGUg -3'
miRNA:   3'- -UUGGGUUGU---------GGCCGCUUG------------AGGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.