miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 5' -60.2 NC_004680.1 + 9976 0.68 0.359484
Target:  5'- aGCAACgCCGAUgAugccuguCGCGGCGGCcgugaaaGCGGu -3'
miRNA:   3'- -UGUUGgGGCUAgU-------GCGCCGCCG-------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 12738 0.68 0.344107
Target:  5'- aGCuucACCCCGGUCuGCGCGGCcugaccagcgccgGGUGCc- -3'
miRNA:   3'- -UGu--UGGGGCUAG-UGCGCCG-------------CCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 34645 0.69 0.314046
Target:  5'- gACGGCaCCCacaaCAUG-GGCGGCGCAGa -3'
miRNA:   3'- -UGUUG-GGGcua-GUGCgCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 23165 0.7 0.271757
Target:  5'- --cGCCCCGGUCGUGCcaGCGGCGcCAGu -3'
miRNA:   3'- uguUGGGGCUAGUGCGc-CGCCGC-GUC- -5'
18246 5' -60.2 NC_004680.1 + 42274 0.71 0.252387
Target:  5'- gGCAGCCCagcuguucggCGAUCuGCGUGGCGGUccaacccauGCGGg -3'
miRNA:   3'- -UGUUGGG----------GCUAG-UGCGCCGCCG---------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 11261 0.71 0.230658
Target:  5'- gAUGACCCCGA-CGCGCcaggaGGCGGCagaaucgggucacccGCAGg -3'
miRNA:   3'- -UGUUGGGGCUaGUGCG-----CCGCCG---------------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 26463 0.71 0.228344
Target:  5'- -aAACCCCGcgCAccuCGUGGUGGCGgGGu -3'
miRNA:   3'- ugUUGGGGCuaGU---GCGCCGCCGCgUC- -5'
18246 5' -60.2 NC_004680.1 + 8951 0.74 0.139263
Target:  5'- cACGACCUgaaCGAuccgcaccUCACGCGGCGGCGaCAc -3'
miRNA:   3'- -UGUUGGG---GCU--------AGUGCGCCGCCGC-GUc -5'
18246 5' -60.2 NC_004680.1 + 43619 0.77 0.097988
Target:  5'- gGCcGCCCUGGUCgaACGUGGCGGCGUc- -3'
miRNA:   3'- -UGuUGGGGCUAG--UGCGCCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 6010 0.68 0.38645
Target:  5'- gACuGCUCCGGUgugaGCGCuGCGGCGCu- -3'
miRNA:   3'- -UGuUGGGGCUAg---UGCGcCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 47700 0.67 0.403967
Target:  5'- uCAGCCCaCGccu-CGaCGGUGGCGCGGu -3'
miRNA:   3'- uGUUGGG-GCuaguGC-GCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 9676 0.67 0.403967
Target:  5'- gACGuucuCgCCGAUCGCGCGGCca-GCAGc -3'
miRNA:   3'- -UGUu---GgGGCUAGUGCGCCGccgCGUC- -5'
18246 5' -60.2 NC_004680.1 + 18743 0.66 0.478763
Target:  5'- aACAACCCCaagCugGCGcGCGaCGCGa -3'
miRNA:   3'- -UGUUGGGGcuaGugCGC-CGCcGCGUc -5'
18246 5' -60.2 NC_004680.1 + 22236 0.66 0.469031
Target:  5'- gACAACCCgaaaccgggaGAcUGCGCGcGCGGCGuCGGg -3'
miRNA:   3'- -UGUUGGGg---------CUaGUGCGC-CGCCGC-GUC- -5'
18246 5' -60.2 NC_004680.1 + 57539 0.66 0.469031
Target:  5'- uCAGCggUGGUUugGgUGGCGGCGCGGu -3'
miRNA:   3'- uGUUGggGCUAGugC-GCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 12407 0.66 0.459401
Target:  5'- cGCGGCaCCCGAa---GCGGCGGuCGCc- -3'
miRNA:   3'- -UGUUG-GGGCUagugCGCCGCC-GCGuc -5'
18246 5' -60.2 NC_004680.1 + 41651 0.66 0.459401
Target:  5'- gGCAguACaCCGAUUcUGCGGCGGCGacgaAGa -3'
miRNA:   3'- -UGU--UGgGGCUAGuGCGCCGCCGCg---UC- -5'
18246 5' -60.2 NC_004680.1 + 15834 0.66 0.449878
Target:  5'- aGCGACCCgccaaGGUCAauCGUGGU-GCGCAGc -3'
miRNA:   3'- -UGUUGGGg----CUAGU--GCGCCGcCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 35874 0.67 0.431163
Target:  5'- cGCAgcGCUCCGAUagguaCAUGCGGUGGaguccugaGCGGg -3'
miRNA:   3'- -UGU--UGGGGCUA-----GUGCGCCGCCg-------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 42318 0.67 0.403967
Target:  5'- cGCcACaCCCGucuUCGCGCGGgcacgcugcaCGGUGCGGu -3'
miRNA:   3'- -UGuUG-GGGCu--AGUGCGCC----------GCCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.