miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18248 5' -56.8 NC_004681.1 + 743 1.09 0.00135
Target:  5'- gGUCGACCGGAUCGGCGUCGAUCACCGg -3'
miRNA:   3'- -CAGCUGGCCUAGCCGCAGCUAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 30260 0.78 0.174838
Target:  5'- -gCGGCCGGuaCGGCGUCGAgacCACCGa -3'
miRNA:   3'- caGCUGGCCuaGCCGCAGCUa--GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 32452 0.76 0.249024
Target:  5'- --gGGCCGGAUCGGUGaCGAugUCGCCa -3'
miRNA:   3'- cagCUGGCCUAGCCGCaGCU--AGUGGc -5'
18248 5' -56.8 NC_004681.1 + 23940 0.73 0.371772
Target:  5'- -gCGgcGCCGGAUCGGCGUgcucaacaCGuUCGCCGa -3'
miRNA:   3'- caGC--UGGCCUAGCCGCA--------GCuAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 24828 0.73 0.380157
Target:  5'- gGUCGACCucAUCGGCGUCGGcggCGCgGg -3'
miRNA:   3'- -CAGCUGGccUAGCCGCAGCUa--GUGgC- -5'
18248 5' -56.8 NC_004681.1 + 51621 0.73 0.380157
Target:  5'- cGUCGACCucuucGGAgguggUGGCGUCGGUguaGCCGa -3'
miRNA:   3'- -CAGCUGG-----CCUa----GCCGCAGCUAg--UGGC- -5'
18248 5' -56.8 NC_004681.1 + 27045 0.72 0.423928
Target:  5'- uUCGAguCCGuGGUCGGCGUCGAgggACCu -3'
miRNA:   3'- cAGCU--GGC-CUAGCCGCAGCUag-UGGc -5'
18248 5' -56.8 NC_004681.1 + 21339 0.72 0.433039
Target:  5'- gGUCGACCGcagCGGCGUCacgGGUCcuACCGg -3'
miRNA:   3'- -CAGCUGGCcuaGCCGCAG---CUAG--UGGC- -5'
18248 5' -56.8 NC_004681.1 + 52766 0.72 0.441335
Target:  5'- gGUCGACCuggcGGAcagcaccUCGGUGUUcGUCGCCGg -3'
miRNA:   3'- -CAGCUGG----CCU-------AGCCGCAGcUAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 35838 0.71 0.461036
Target:  5'- uUCGaACCGGAUgGGUGggCGGUCGCUc -3'
miRNA:   3'- cAGC-UGGCCUAgCCGCa-GCUAGUGGc -5'
18248 5' -56.8 NC_004681.1 + 40163 0.71 0.480222
Target:  5'- uGUCGAuCUGGGUgcUGGCGUCGGcCugCGg -3'
miRNA:   3'- -CAGCU-GGCCUA--GCCGCAGCUaGugGC- -5'
18248 5' -56.8 NC_004681.1 + 39955 0.68 0.643816
Target:  5'- aGUCGAuCCGcGcgcGUCGGCGcCGGgucaacUCACCGg -3'
miRNA:   3'- -CAGCU-GGC-C---UAGCCGCaGCU------AGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 9407 0.68 0.643816
Target:  5'- cGUUGACCGGGUUgccguaGGCGUUGccgaagaaGUUGCCGc -3'
miRNA:   3'- -CAGCUGGCCUAG------CCGCAGC--------UAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 58465 0.68 0.654287
Target:  5'- uGUCGGuaaccuuuCCGuucuuGUCGGUGUUGGUCACCa -3'
miRNA:   3'- -CAGCU--------GGCc----UAGCCGCAGCUAGUGGc -5'
18248 5' -56.8 NC_004681.1 + 56211 0.68 0.654287
Target:  5'- aGUCGGuggcCUGGAcCGGCGUCGA-C-CCGa -3'
miRNA:   3'- -CAGCU----GGCCUaGCCGCAGCUaGuGGC- -5'
18248 5' -56.8 NC_004681.1 + 7331 0.67 0.675164
Target:  5'- -aUGGCCuGGAgaagcgCGGUGUCGccGUUACCGg -3'
miRNA:   3'- caGCUGG-CCUa-----GCCGCAGC--UAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 52620 0.67 0.675164
Target:  5'- cUCGGCCaaGUCGGUgagGUCGAacUCGCCGu -3'
miRNA:   3'- cAGCUGGccUAGCCG---CAGCU--AGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 9055 0.67 0.684514
Target:  5'- cGUCGGCCaGGAcacugucgcgUCGcugaaguauggccGCGUCG-UCACCGg -3'
miRNA:   3'- -CAGCUGG-CCU----------AGC-------------CGCAGCuAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 24450 0.67 0.695892
Target:  5'- cGUUGACCGGcuGUcCGGCaaCGAggCGCCGg -3'
miRNA:   3'- -CAGCUGGCC--UA-GCCGcaGCUa-GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 27316 0.67 0.695892
Target:  5'- -aCGGCCaGGAggGGCG-CGA-CGCCGg -3'
miRNA:   3'- caGCUGG-CCUagCCGCaGCUaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.