Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18248 | 5' | -56.8 | NC_004681.1 | + | 30260 | 0.78 | 0.174838 |
Target: 5'- -gCGGCCGGuaCGGCGUCGAgacCACCGa -3' miRNA: 3'- caGCUGGCCuaGCCGCAGCUa--GUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 12183 | 0.66 | 0.785266 |
Target: 5'- cGUCuacCCGGAccCGGCGUCGGgcuuccccgcgCGCCGc -3' miRNA: 3'- -CAGcu-GGCCUa-GCCGCAGCUa----------GUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 7264 | 0.66 | 0.785266 |
Target: 5'- -gCGGCCGuccaccUCGGCGcCGAgugCGCCGc -3' miRNA: 3'- caGCUGGCcu----AGCCGCaGCUa--GUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 24713 | 0.66 | 0.775782 |
Target: 5'- -aCGugCcauGGGUCGGCaucgcaGUCGA-CACCGg -3' miRNA: 3'- caGCugG---CCUAGCCG------CAGCUaGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 54504 | 0.66 | 0.763254 |
Target: 5'- --aGGCCaagagcuggucccaGGAUCGGUGgcccgaGAUCACCGc -3' miRNA: 3'- cagCUGG--------------CCUAGCCGCag----CUAGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 59587 | 0.66 | 0.746563 |
Target: 5'- aGUCGACCuGAUCacucaGGCGgauggCG-UCACCa -3' miRNA: 3'- -CAGCUGGcCUAG-----CCGCa----GCuAGUGGc -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 25788 | 0.67 | 0.706177 |
Target: 5'- uUCgGAUCGGcUCGGCGaCGAagccauUCACCGc -3' miRNA: 3'- cAG-CUGGCCuAGCCGCaGCU------AGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 24450 | 0.67 | 0.695892 |
Target: 5'- cGUUGACCGGcuGUcCGGCaaCGAggCGCCGg -3' miRNA: 3'- -CAGCUGGCC--UA-GCCGcaGCUa-GUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 9055 | 0.67 | 0.684514 |
Target: 5'- cGUCGGCCaGGAcacugucgcgUCGcugaaguauggccGCGUCG-UCACCGg -3' miRNA: 3'- -CAGCUGG-CCU----------AGC-------------CGCAGCuAGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 56211 | 0.68 | 0.654287 |
Target: 5'- aGUCGGuggcCUGGAcCGGCGUCGA-C-CCGa -3' miRNA: 3'- -CAGCU----GGCCUaGCCGCAGCUaGuGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 23940 | 0.73 | 0.371772 |
Target: 5'- -gCGgcGCCGGAUCGGCGUgcucaacaCGuUCGCCGa -3' miRNA: 3'- caGC--UGGCCUAGCCGCA--------GCuAGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 24828 | 0.73 | 0.380157 |
Target: 5'- gGUCGACCucAUCGGCGUCGGcggCGCgGg -3' miRNA: 3'- -CAGCUGGccUAGCCGCAGCUa--GUGgC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 27045 | 0.72 | 0.423928 |
Target: 5'- uUCGAguCCGuGGUCGGCGUCGAgggACCu -3' miRNA: 3'- cAGCU--GGC-CUAGCCGCAGCUag-UGGc -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 21339 | 0.72 | 0.433039 |
Target: 5'- gGUCGACCGcagCGGCGUCacgGGUCcuACCGg -3' miRNA: 3'- -CAGCUGGCcuaGCCGCAG---CUAG--UGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 52766 | 0.72 | 0.441335 |
Target: 5'- gGUCGACCuggcGGAcagcaccUCGGUGUUcGUCGCCGg -3' miRNA: 3'- -CAGCUGG----CCU-------AGCCGCAGcUAGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 35838 | 0.71 | 0.461036 |
Target: 5'- uUCGaACCGGAUgGGUGggCGGUCGCUc -3' miRNA: 3'- cAGC-UGGCCUAgCCGCa-GCUAGUGGc -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 39955 | 0.68 | 0.643816 |
Target: 5'- aGUCGAuCCGcGcgcGUCGGCGcCGGgucaacUCACCGg -3' miRNA: 3'- -CAGCU-GGC-C---UAGCCGCaGCU------AGUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 35745 | 0.66 | 0.785266 |
Target: 5'- -gCGGCgGGAuuUCGuGUGUCGGgaagcgCGCCGa -3' miRNA: 3'- caGCUGgCCU--AGC-CGCAGCUa-----GUGGC- -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 32452 | 0.76 | 0.249024 |
Target: 5'- --gGGCCGGAUCGGUGaCGAugUCGCCa -3' miRNA: 3'- cagCUGGCCUAGCCGCaGCU--AGUGGc -5' |
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18248 | 5' | -56.8 | NC_004681.1 | + | 51621 | 0.73 | 0.380157 |
Target: 5'- cGUCGACCucuucGGAgguggUGGCGUCGGUguaGCCGa -3' miRNA: 3'- -CAGCUGG-----CCUa----GCCGCAGCUAg--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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