miRNA display CGI


Results 41 - 60 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 16846 0.68 0.407696
Target:  5'- aGGCAGGaCCGGagcgucaggcagcuUGacGGUGccaucgcuGCCACCGCCc -3'
miRNA:   3'- -CCGUCCgGGCU--------------AU--CCAC--------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 3385 0.68 0.407696
Target:  5'- aGGCGGGCgCGGgacuccuugaGGGUGGCCuuCCauccgagcgagcgaGCCa -3'
miRNA:   3'- -CCGUCCGgGCUa---------UCCACCGGu-GG--------------CGG- -5'
18250 5' -61.2 NC_004681.1 + 17939 0.68 0.401635
Target:  5'- cGCAGGUgagugCCGAgggcGGcuccgugGGCCACCGCa -3'
miRNA:   3'- cCGUCCG-----GGCUau--CCa------CCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 64701 0.68 0.401635
Target:  5'- cGCAGGCCCcAUGacgcuGGUGGgU-CCGCCc -3'
miRNA:   3'- cCGUCCGGGcUAU-----CCACCgGuGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 25000 0.68 0.401634
Target:  5'- uGGCAGcuGCCCacuugccGG-GGUCGCCGCCc -3'
miRNA:   3'- -CCGUC--CGGGcuau---CCaCCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 42208 0.68 0.393075
Target:  5'- uGGCAucgucaaaguuGGCCCGGgagAGGuUGGCC-CCGa- -3'
miRNA:   3'- -CCGU-----------CCGGGCUa--UCC-ACCGGuGGCgg -5'
18250 5' -61.2 NC_004681.1 + 64216 0.68 0.384635
Target:  5'- cGCAuGGUCUGGggcgAGGaUGGCCGCUGgCa -3'
miRNA:   3'- cCGU-CCGGGCUa---UCC-ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 54501 0.68 0.376316
Target:  5'- aGCAGGCCaagagcuggucccagGAUcGGUGGCCcgagaucACCGCa -3'
miRNA:   3'- cCGUCCGGg--------------CUAuCCACCGG-------UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 39998 0.68 0.376316
Target:  5'- aGGCuGGCCgCGcgcUGGG-GGUCuCCGCCc -3'
miRNA:   3'- -CCGuCCGG-GCu--AUCCaCCGGuGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 39089 0.68 0.376316
Target:  5'- uGCAaGCCCu---GGUGGCCACCuGCg -3'
miRNA:   3'- cCGUcCGGGcuauCCACCGGUGG-CGg -5'
18250 5' -61.2 NC_004681.1 + 16500 0.68 0.368119
Target:  5'- cGCAuGGCCUGGUcacccuuggAGGUGGCCGagGCa -3'
miRNA:   3'- cCGU-CCGGGCUA---------UCCACCGGUggCGg -5'
18250 5' -61.2 NC_004681.1 + 36379 0.68 0.368119
Target:  5'- gGGCGaacGG-CgGGUGGGUGGCgCACUGCg -3'
miRNA:   3'- -CCGU---CCgGgCUAUCCACCG-GUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 75792 0.68 0.365684
Target:  5'- cGCAGGUCagaGGggguggGGGUGGUugcggucucgaaauCGCCGCCu -3'
miRNA:   3'- cCGUCCGGg--CUa-----UCCACCG--------------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 74165 0.69 0.360045
Target:  5'- aGuCGGGCCaac-AGGUGGCCAgCGCa -3'
miRNA:   3'- cC-GUCCGGgcuaUCCACCGGUgGCGg -5'
18250 5' -61.2 NC_004681.1 + 59800 0.69 0.358445
Target:  5'- uGGCAGGCCgcacucccagcaGggGGcGUGGCggCGCUGCCa -3'
miRNA:   3'- -CCGUCCGGg-----------CuaUC-CACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 62093 0.69 0.35526
Target:  5'- aGUAGGCCgCGAUcuggucgaacAGGUGcaugcccgcgaugacGCUGCCGCCc -3'
miRNA:   3'- cCGUCCGG-GCUA----------UCCAC---------------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 53867 0.69 0.351308
Target:  5'- gGGguGGCCUacaucAUGGGggcugucUGGCCAUCGCa -3'
miRNA:   3'- -CCguCCGGGc----UAUCC-------ACCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 3324 0.69 0.344272
Target:  5'- uGCGGacCCCGAUuccGGGUGaGCUggACCGCCu -3'
miRNA:   3'- cCGUCc-GGGCUA---UCCAC-CGG--UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 7458 0.69 0.344272
Target:  5'- cGCGGGCuuGGcGGGaGGCUucGCCGCg -3'
miRNA:   3'- cCGUCCGggCUaUCCaCCGG--UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 51704 0.69 0.343497
Target:  5'- gGGCGGGggauucucCCCGGggaaccuGGUGGUCgucggcgGCCGCCc -3'
miRNA:   3'- -CCGUCC--------GGGCUau-----CCACCGG-------UGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.