miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 63537 0.66 0.483673
Target:  5'- cGGCcgAGGCUgGAagccuGGUGGCCagggaauucaggACCGCa -3'
miRNA:   3'- -CCG--UCCGGgCUau---CCACCGG------------UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 46410 0.66 0.483673
Target:  5'- uGCcuGGCCCacGAUgcAGGaUGGCUGcCCGCCg -3'
miRNA:   3'- cCGu-CCGGG--CUA--UCC-ACCGGU-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 17938 0.66 0.482716
Target:  5'- gGGC--GCCCGGguuGGUgaGGCCggugccuugcgcgGCCGCCg -3'
miRNA:   3'- -CCGucCGGGCUau-CCA--CCGG-------------UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 53025 0.66 0.474147
Target:  5'- --gAGGUugUCGAUGGGUaGGCacuCCGCCg -3'
miRNA:   3'- ccgUCCG--GGCUAUCCA-CCGgu-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 6386 0.67 0.468476
Target:  5'- cGGCAGGCCCauGAucUcgcggcccucguucgGGGUGGCgaCACCGg- -3'
miRNA:   3'- -CCGUCCGGG--CU--A---------------UCCACCG--GUGGCgg -5'
18250 5' -61.2 NC_004681.1 + 40232 0.67 0.464716
Target:  5'- cGGCcuGCCUGucccGGGcGGUCACCGaCCu -3'
miRNA:   3'- -CCGucCGGGCua--UCCaCCGGUGGC-GG- -5'
18250 5' -61.2 NC_004681.1 + 1629 0.67 0.464716
Target:  5'- aGGCuGGCCCGGUcaccagGGGUGaGuCCGaaGCg -3'
miRNA:   3'- -CCGuCCGGGCUA------UCCAC-C-GGUggCGg -5'
18250 5' -61.2 NC_004681.1 + 53380 0.67 0.464716
Target:  5'- uGCgAGGUCCGuAUGGGUcauccgggagGGCUauacccuugGCCGCCu -3'
miRNA:   3'- cCG-UCCGGGC-UAUCCA----------CCGG---------UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 42092 0.67 0.464716
Target:  5'- aGGCuGGCCgaGAucgcccccgcgUAGGUcaGGUCAgCGCCg -3'
miRNA:   3'- -CCGuCCGGg-CU-----------AUCCA--CCGGUgGCGG- -5'
18250 5' -61.2 NC_004681.1 + 56433 0.67 0.464716
Target:  5'- aGGCGGGCCgCGA-----GGUCAUCGUCa -3'
miRNA:   3'- -CCGUCCGG-GCUauccaCCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 14489 0.67 0.464716
Target:  5'- aGCAGGgCgCGcu-GGUGGCCGgUGCUg -3'
miRNA:   3'- cCGUCCgG-GCuauCCACCGGUgGCGG- -5'
18250 5' -61.2 NC_004681.1 + 25843 0.67 0.464716
Target:  5'- cGGCAcGCCCGu--GGUGGagaUGCCGUa -3'
miRNA:   3'- -CCGUcCGGGCuauCCACCg--GUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 59649 0.67 0.463778
Target:  5'- aGCGGGCguCCGAagcggUGGGcuuccagccaacaUGGCagCGCCGCCa -3'
miRNA:   3'- cCGUCCG--GGCU-----AUCC-------------ACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 31298 0.67 0.460971
Target:  5'- cGCAGaaGCCCGAaggcauucgccuGGUGGUCGCaGCCu -3'
miRNA:   3'- cCGUC--CGGGCUau----------CCACCGGUGgCGG- -5'
18250 5' -61.2 NC_004681.1 + 58622 0.67 0.455384
Target:  5'- cGGCucgacucGGCCCcucaAGGUGuCCugCGCCa -3'
miRNA:   3'- -CCGu------CCGGGcua-UCCACcGGugGCGG- -5'
18250 5' -61.2 NC_004681.1 + 66938 0.67 0.446153
Target:  5'- uGGC-GGCCCu---GGU-GCCGCgCGCCg -3'
miRNA:   3'- -CCGuCCGGGcuauCCAcCGGUG-GCGG- -5'
18250 5' -61.2 NC_004681.1 + 39395 0.67 0.437027
Target:  5'- cGCAGGUauuugUCGAU-GGUGGCCG-CGCa -3'
miRNA:   3'- cCGUCCG-----GGCUAuCCACCGGUgGCGg -5'
18250 5' -61.2 NC_004681.1 + 2915 0.67 0.428011
Target:  5'- uGgGGGCCUGGcUGGGcgacGG-CACCGCCa -3'
miRNA:   3'- cCgUCCGGGCU-AUCCa---CCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 21662 0.67 0.42801
Target:  5'- gGGUgauGGCCauuUAGGUggaauucggugaGGCCACCGCg -3'
miRNA:   3'- -CCGu--CCGGgcuAUCCA------------CCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 45051 0.67 0.419104
Target:  5'- gGGCcuGaGCCCGAgcucgcGGUGGCggcucCACCGCg -3'
miRNA:   3'- -CCGu-C-CGGGCUau----CCACCG-----GUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.