Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18250 | 5' | -61.2 | NC_004681.1 | + | 49566 | 0.7 | 0.31715 |
Target: 5'- gGGCAGGCCCGAggcaccaacgacUgcaucAGGcgGGCCAagaaggcgcagauucCCGUCg -3' miRNA: 3'- -CCGUCCGGGCU------------A-----UCCa-CCGGU---------------GGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 52956 | 0.69 | 0.321556 |
Target: 5'- gGGCAGG-CCGAUGGccaGCCuuCCGCCc -3' miRNA: 3'- -CCGUCCgGGCUAUCcacCGGu-GGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 9022 | 0.69 | 0.321556 |
Target: 5'- aGCAGGCCguUGAcgccgGGGUacCCGCCGCCa -3' miRNA: 3'- cCGUCCGG--GCUa----UCCAccGGUGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 18520 | 0.69 | 0.329002 |
Target: 5'- uGGaCAGcgauGCCCGAUccGGGUGcgaaggcguuuGCCGCCGCg -3' miRNA: 3'- -CC-GUC----CGGGCUA--UCCAC-----------CGGUGGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 18329 | 0.69 | 0.342722 |
Target: 5'- aGGCGGuuucggagucugcccGCCCGGUacacccggGGGUGcGCCgggaggcgcuccaggACCGCCa -3' miRNA: 3'- -CCGUC---------------CGGGCUA--------UCCAC-CGG---------------UGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 51704 | 0.69 | 0.343497 |
Target: 5'- gGGCGGGggauucucCCCGGggaaccuGGUGGUCgucggcgGCCGCCc -3' miRNA: 3'- -CCGUCC--------GGGCUau-----CCACCGG-------UGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 3324 | 0.69 | 0.344272 |
Target: 5'- uGCGGacCCCGAUuccGGGUGaGCUggACCGCCu -3' miRNA: 3'- cCGUCc-GGGCUA---UCCAC-CGG--UGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 7458 | 0.69 | 0.344272 |
Target: 5'- cGCGGGCuuGGcGGGaGGCUucGCCGCg -3' miRNA: 3'- cCGUCCGggCUaUCCaCCGG--UGGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 53867 | 0.69 | 0.351308 |
Target: 5'- gGGguGGCCUacaucAUGGGggcugucUGGCCAUCGCa -3' miRNA: 3'- -CCguCCGGGc----UAUCC-------ACCGGUGGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 62093 | 0.69 | 0.35526 |
Target: 5'- aGUAGGCCgCGAUcuggucgaacAGGUGcaugcccgcgaugacGCUGCCGCCc -3' miRNA: 3'- cCGUCCGG-GCUA----------UCCAC---------------CGGUGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 59800 | 0.69 | 0.358445 |
Target: 5'- uGGCAGGCCgcacucccagcaGggGGcGUGGCggCGCUGCCa -3' miRNA: 3'- -CCGUCCGGg-----------CuaUC-CACCG--GUGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 74165 | 0.69 | 0.360045 |
Target: 5'- aGuCGGGCCaac-AGGUGGCCAgCGCa -3' miRNA: 3'- cC-GUCCGGgcuaUCCACCGGUgGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 75792 | 0.68 | 0.365684 |
Target: 5'- cGCAGGUCagaGGggguggGGGUGGUugcggucucgaaauCGCCGCCu -3' miRNA: 3'- cCGUCCGGg--CUa-----UCCACCG--------------GUGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 16500 | 0.68 | 0.368119 |
Target: 5'- cGCAuGGCCUGGUcacccuuggAGGUGGCCGagGCa -3' miRNA: 3'- cCGU-CCGGGCUA---------UCCACCGGUggCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 36379 | 0.68 | 0.368119 |
Target: 5'- gGGCGaacGG-CgGGUGGGUGGCgCACUGCg -3' miRNA: 3'- -CCGU---CCgGgCUAUCCACCG-GUGGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 39998 | 0.68 | 0.376316 |
Target: 5'- aGGCuGGCCgCGcgcUGGG-GGUCuCCGCCc -3' miRNA: 3'- -CCGuCCGG-GCu--AUCCaCCGGuGGCGG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 39089 | 0.68 | 0.376316 |
Target: 5'- uGCAaGCCCu---GGUGGCCACCuGCg -3' miRNA: 3'- cCGUcCGGGcuauCCACCGGUGG-CGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 54501 | 0.68 | 0.376316 |
Target: 5'- aGCAGGCCaagagcuggucccagGAUcGGUGGCCcgagaucACCGCa -3' miRNA: 3'- cCGUCCGGg--------------CUAuCCACCGG-------UGGCGg -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 64216 | 0.68 | 0.384635 |
Target: 5'- cGCAuGGUCUGGggcgAGGaUGGCCGCUGgCa -3' miRNA: 3'- cCGU-CCGGGCUa---UCC-ACCGGUGGCgG- -5' |
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18250 | 5' | -61.2 | NC_004681.1 | + | 42208 | 0.68 | 0.393075 |
Target: 5'- uGGCAucgucaaaguuGGCCCGGgagAGGuUGGCC-CCGa- -3' miRNA: 3'- -CCGU-----------CCGGGCUa--UCC-ACCGGuGGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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