miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 1482 1.13 0.00023
Target:  5'- cGGCAGGCCCGAUAGGUGGCCACCGCCu -3'
miRNA:   3'- -CCGUCCGGGCUAUCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 20015 0.78 0.088628
Target:  5'- aGCAGGCCCGc--GGUGGCCuucaUGCCg -3'
miRNA:   3'- cCGUCCGGGCuauCCACCGGug--GCGG- -5'
18250 5' -61.2 NC_004681.1 + 12251 0.76 0.118688
Target:  5'- cGGguGGCCCGGUGcuGUGGCCGacucccgaggUCGCCc -3'
miRNA:   3'- -CCguCCGGGCUAUc-CACCGGU----------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23450 0.75 0.135293
Target:  5'- cGCAGuuCUGAUGGGUcGGgCGCCGCCa -3'
miRNA:   3'- cCGUCcgGGCUAUCCA-CCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 41155 0.75 0.137781
Target:  5'- cGGCGgcGGCgCCGAagagggccgucgcaUGGGUGGCUACCcuGCCg -3'
miRNA:   3'- -CCGU--CCG-GGCU--------------AUCCACCGGUGG--CGG- -5'
18250 5' -61.2 NC_004681.1 + 16338 0.75 0.142146
Target:  5'- aGCAGGCCaucuccgcugcggCGGUGGGUGGCgACgagggCGCCa -3'
miRNA:   3'- cCGUCCGG-------------GCUAUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 68991 0.74 0.15401
Target:  5'- uGGuCAGcGCCuCGAUGGcGUcGGCCGCgGCCa -3'
miRNA:   3'- -CC-GUC-CGG-GCUAUC-CA-CCGGUGgCGG- -5'
18250 5' -61.2 NC_004681.1 + 32009 0.74 0.162134
Target:  5'- gGGaugAGGCCCGcgAuGGcGGCCGCCGCg -3'
miRNA:   3'- -CCg--UCCGGGCuaU-CCaCCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 23590 0.74 0.16634
Target:  5'- gGGCuacgaGGGCaCGG-GGGUGGCCAuCCGCCu -3'
miRNA:   3'- -CCG-----UCCGgGCUaUCCACCGGU-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 45571 0.73 0.188863
Target:  5'- aGCAGguggacaucGCCCGcaAGGUGGCCGgUGCCu -3'
miRNA:   3'- cCGUC---------CGGGCuaUCCACCGGUgGCGG- -5'
18250 5' -61.2 NC_004681.1 + 39212 0.72 0.212436
Target:  5'- cGGCGGucgcggaagguguuGCCCGcgcAGGUGGCCACCaggGCUu -3'
miRNA:   3'- -CCGUC--------------CGGGCua-UCCACCGGUGG---CGG- -5'
18250 5' -61.2 NC_004681.1 + 20433 0.72 0.212965
Target:  5'- -uCAGGCgCGAccaucgacagcaAGGUGGUCGCCGCCc -3'
miRNA:   3'- ccGUCCGgGCUa-----------UCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23345 0.72 0.22487
Target:  5'- cGGCAGcuucaggcGCCCGA--GGUGGUCAaccuccugcCCGCCu -3'
miRNA:   3'- -CCGUC--------CGGGCUauCCACCGGU---------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64917 0.72 0.229337
Target:  5'- cGCGGcGCCCGccuggagcacgAGGUGGCgACgCGCCu -3'
miRNA:   3'- cCGUC-CGGGCua---------UCCACCGgUG-GCGG- -5'
18250 5' -61.2 NC_004681.1 + 48504 0.72 0.230466
Target:  5'- cGCGGagaaCCCGGagcGGGUGGCgCACUGCCa -3'
miRNA:   3'- cCGUCc---GGGCUa--UCCACCG-GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64346 0.71 0.260224
Target:  5'- uGGCgaagaagugAGGCCCGcggacaaggcGUGGGcgacaaUGGCCACCGgCa -3'
miRNA:   3'- -CCG---------UCCGGGC----------UAUCC------ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 846 0.71 0.260224
Target:  5'- cGGCAgGGCCgGGUAGGccGUCACCaGUCg -3'
miRNA:   3'- -CCGU-CCGGgCUAUCCacCGGUGG-CGG- -5'
18250 5' -61.2 NC_004681.1 + 18382 0.7 0.286228
Target:  5'- uGGCAGGCC----AGGcGGCgGCCGCg -3'
miRNA:   3'- -CCGUCCGGgcuaUCCaCCGgUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 2103 0.7 0.29998
Target:  5'- uGGCcgcGGCCgGAUGGGUgcugGGCCAaucaGCCc -3'
miRNA:   3'- -CCGu--CCGGgCUAUCCA----CCGGUgg--CGG- -5'
18250 5' -61.2 NC_004681.1 + 23768 0.7 0.309907
Target:  5'- aGGCGGGCgcguaggaggccagcUCGAUGGGcucacccGGCuCGCCGUCg -3'
miRNA:   3'- -CCGUCCG---------------GGCUAUCCa------CCG-GUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.