miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 846 0.71 0.260224
Target:  5'- cGGCAgGGCCgGGUAGGccGUCACCaGUCg -3'
miRNA:   3'- -CCGU-CCGGgCUAUCCacCGGUGG-CGG- -5'
18250 5' -61.2 NC_004681.1 + 1482 1.13 0.00023
Target:  5'- cGGCAGGCCCGAUAGGUGGCCACCGCCu -3'
miRNA:   3'- -CCGUCCGGGCUAUCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 1629 0.67 0.464716
Target:  5'- aGGCuGGCCCGGUcaccagGGGUGaGuCCGaaGCg -3'
miRNA:   3'- -CCGuCCGGGCUA------UCCAC-C-GGUggCGg -5'
18250 5' -61.2 NC_004681.1 + 1747 0.66 0.512781
Target:  5'- cGGguGGa-CGAUacccAGGUaguuccccaGGCCAUCGCCc -3'
miRNA:   3'- -CCguCCggGCUA----UCCA---------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 2103 0.7 0.29998
Target:  5'- uGGCcgcGGCCgGAUGGGUgcugGGCCAaucaGCCc -3'
miRNA:   3'- -CCGu--CCGGgCUAUCCA----CCGGUgg--CGG- -5'
18250 5' -61.2 NC_004681.1 + 2915 0.67 0.428011
Target:  5'- uGgGGGCCUGGcUGGGcgacGG-CACCGCCa -3'
miRNA:   3'- cCgUCCGGGCU-AUCCa---CCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 3324 0.69 0.344272
Target:  5'- uGCGGacCCCGAUuccGGGUGaGCUggACCGCCu -3'
miRNA:   3'- cCGUCc-GGGCUA---UCCAC-CGG--UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 3385 0.68 0.407696
Target:  5'- aGGCGGGCgCGGgacuccuugaGGGUGGCCuuCCauccgagcgagcgaGCCa -3'
miRNA:   3'- -CCGUCCGgGCUa---------UCCACCGGu-GG--------------CGG- -5'
18250 5' -61.2 NC_004681.1 + 6386 0.67 0.468476
Target:  5'- cGGCAGGCCCauGAucUcgcggcccucguucgGGGUGGCgaCACCGg- -3'
miRNA:   3'- -CCGUCCGGG--CU--A---------------UCCACCG--GUGGCgg -5'
18250 5' -61.2 NC_004681.1 + 7369 0.66 0.502994
Target:  5'- cGGCGcacucGGCgCCGA--GGUGGaCgGCCGCg -3'
miRNA:   3'- -CCGU-----CCG-GGCUauCCACC-GgUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 7458 0.69 0.344272
Target:  5'- cGCGGGCuuGGcGGGaGGCUucGCCGCg -3'
miRNA:   3'- cCGUCCGggCUaUCCaCCGG--UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 9022 0.69 0.321556
Target:  5'- aGCAGGCCguUGAcgccgGGGUacCCGCCGCCa -3'
miRNA:   3'- cCGUCCGG--GCUa----UCCAccGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 12251 0.76 0.118688
Target:  5'- cGGguGGCCCGGUGcuGUGGCCGacucccgaggUCGCCc -3'
miRNA:   3'- -CCguCCGGGCUAUc-CACCGGU----------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 12649 0.66 0.522645
Target:  5'- gGGCugacGGCgUgGAUGGG-GGCacccccauCACCGCCg -3'
miRNA:   3'- -CCGu---CCG-GgCUAUCCaCCG--------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 14489 0.67 0.464716
Target:  5'- aGCAGGgCgCGcu-GGUGGCCGgUGCUg -3'
miRNA:   3'- cCGUCCgG-GCuauCCACCGGUgGCGG- -5'
18250 5' -61.2 NC_004681.1 + 14696 0.66 0.483673
Target:  5'- aGCucGGCCCcac-GGUGGguuaCACCGCCu -3'
miRNA:   3'- cCGu-CCGGGcuauCCACCg---GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 16338 0.75 0.142146
Target:  5'- aGCAGGCCaucuccgcugcggCGGUGGGUGGCgACgagggCGCCa -3'
miRNA:   3'- cCGUCCGG-------------GCUAUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 16500 0.68 0.368119
Target:  5'- cGCAuGGCCUGGUcacccuuggAGGUGGCCGagGCa -3'
miRNA:   3'- cCGU-CCGGGCUA---------UCCACCGGUggCGg -5'
18250 5' -61.2 NC_004681.1 + 16617 0.66 0.512781
Target:  5'- uGCAGGCCgCGAUggAGGcGGCgggCAUCaGCCc -3'
miRNA:   3'- cCGUCCGG-GCUA--UCCaCCG---GUGG-CGG- -5'
18250 5' -61.2 NC_004681.1 + 16846 0.68 0.407696
Target:  5'- aGGCAGGaCCGGagcgucaggcagcuUGacGGUGccaucgcuGCCACCGCCc -3'
miRNA:   3'- -CCGUCCgGGCU--------------AU--CCAC--------CGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.