miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 75792 0.68 0.365684
Target:  5'- cGCAGGUCagaGGggguggGGGUGGUugcggucucgaaauCGCCGCCu -3'
miRNA:   3'- cCGUCCGGg--CUa-----UCCACCG--------------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 74165 0.69 0.360045
Target:  5'- aGuCGGGCCaac-AGGUGGCCAgCGCa -3'
miRNA:   3'- cC-GUCCGGgcuaUCCACCGGUgGCGg -5'
18250 5' -61.2 NC_004681.1 + 68991 0.74 0.15401
Target:  5'- uGGuCAGcGCCuCGAUGGcGUcGGCCGCgGCCa -3'
miRNA:   3'- -CC-GUC-CGG-GCUAUC-CA-CCGGUGgCGG- -5'
18250 5' -61.2 NC_004681.1 + 66938 0.67 0.446153
Target:  5'- uGGC-GGCCCu---GGU-GCCGCgCGCCg -3'
miRNA:   3'- -CCGuCCGGGcuauCCAcCGGUG-GCGG- -5'
18250 5' -61.2 NC_004681.1 + 66738 0.66 0.502995
Target:  5'- cGguGGCCaaugcgcagaaGGccGGUGGCaaCGCCGCCu -3'
miRNA:   3'- cCguCCGGg----------CUauCCACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 65349 0.66 0.512781
Target:  5'- aGGCAGGCgaUGGcuuucacgAGGUgcggcaGGCCGCUGUCg -3'
miRNA:   3'- -CCGUCCGg-GCUa-------UCCA------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64917 0.72 0.229337
Target:  5'- cGCGGcGCCCGccuggagcacgAGGUGGCgACgCGCCu -3'
miRNA:   3'- cCGUC-CGGGCua---------UCCACCGgUG-GCGG- -5'
18250 5' -61.2 NC_004681.1 + 64701 0.68 0.401635
Target:  5'- cGCAGGCCCcAUGacgcuGGUGGgU-CCGCCc -3'
miRNA:   3'- cCGUCCGGGcUAU-----CCACCgGuGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64482 0.66 0.49329
Target:  5'- -aCAGGa-CGAUGccGGUGGCCAUUGUCg -3'
miRNA:   3'- ccGUCCggGCUAU--CCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64346 0.71 0.260224
Target:  5'- uGGCgaagaagugAGGCCCGcggacaaggcGUGGGcgacaaUGGCCACCGgCa -3'
miRNA:   3'- -CCG---------UCCGGGC----------UAUCC------ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 64216 0.68 0.384635
Target:  5'- cGCAuGGUCUGGggcgAGGaUGGCCGCUGgCa -3'
miRNA:   3'- cCGU-CCGGGCUa---UCC-ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 63537 0.66 0.483673
Target:  5'- cGGCcgAGGCUgGAagccuGGUGGCCagggaauucaggACCGCa -3'
miRNA:   3'- -CCG--UCCGGgCUau---CCACCGG------------UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 62507 0.66 0.522645
Target:  5'- uGGCccAGGCC--AUGGGcacccUGGCaGCCGCCu -3'
miRNA:   3'- -CCG--UCCGGgcUAUCC-----ACCGgUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 62093 0.69 0.35526
Target:  5'- aGUAGGCCgCGAUcuggucgaacAGGUGcaugcccgcgaugacGCUGCCGCCc -3'
miRNA:   3'- cCGUCCGG-GCUA----------UCCAC---------------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 60574 0.66 0.502995
Target:  5'- cGCuGGCCgaCGAacguGGUgcucgacgaGGCCGCCGCUg -3'
miRNA:   3'- cCGuCCGG--GCUau--CCA---------CCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 59800 0.69 0.358445
Target:  5'- uGGCAGGCCgcacucccagcaGggGGcGUGGCggCGCUGCCa -3'
miRNA:   3'- -CCGUCCGGg-----------CuaUC-CACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 59649 0.67 0.463778
Target:  5'- aGCGGGCguCCGAagcggUGGGcuuccagccaacaUGGCagCGCCGCCa -3'
miRNA:   3'- cCGUCCG--GGCU-----AUCC-------------ACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 59282 0.66 0.53258
Target:  5'- cGGgAGGCCguccgUGAcaUAGGUGGCgACguaggUGCCg -3'
miRNA:   3'- -CCgUCCGG-----GCU--AUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 58622 0.67 0.455384
Target:  5'- cGGCucgacucGGCCCcucaAGGUGuCCugCGCCa -3'
miRNA:   3'- -CCGu------CCGGGcua-UCCACcGGugGCGG- -5'
18250 5' -61.2 NC_004681.1 + 57569 0.66 0.492325
Target:  5'- aGGacaaGGGCaaGucucAGGUGGCCAgccugggaaccguCCGCCg -3'
miRNA:   3'- -CCg---UCCGggCua--UCCACCGGU-------------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.