miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 64701 0.68 0.401635
Target:  5'- cGCAGGCCCcAUGacgcuGGUGGgU-CCGCCc -3'
miRNA:   3'- cCGUCCGGGcUAU-----CCACCgGuGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 51704 0.69 0.343497
Target:  5'- gGGCGGGggauucucCCCGGggaaccuGGUGGUCgucggcgGCCGCCc -3'
miRNA:   3'- -CCGUCC--------GGGCUau-----CCACCGG-------UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 3324 0.69 0.344272
Target:  5'- uGCGGacCCCGAUuccGGGUGaGCUggACCGCCu -3'
miRNA:   3'- cCGUCc-GGGCUA---UCCAC-CGG--UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 53867 0.69 0.351308
Target:  5'- gGGguGGCCUacaucAUGGGggcugucUGGCCAUCGCa -3'
miRNA:   3'- -CCguCCGGGc----UAUCC-------ACCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 74165 0.69 0.360045
Target:  5'- aGuCGGGCCaac-AGGUGGCCAgCGCa -3'
miRNA:   3'- cC-GUCCGGgcuaUCCACCGGUgGCGg -5'
18250 5' -61.2 NC_004681.1 + 75792 0.68 0.365684
Target:  5'- cGCAGGUCagaGGggguggGGGUGGUugcggucucgaaauCGCCGCCu -3'
miRNA:   3'- cCGUCCGGg--CUa-----UCCACCG--------------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 54501 0.68 0.376316
Target:  5'- aGCAGGCCaagagcuggucccagGAUcGGUGGCCcgagaucACCGCa -3'
miRNA:   3'- cCGUCCGGg--------------CUAuCCACCGG-------UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 39089 0.68 0.376316
Target:  5'- uGCAaGCCCu---GGUGGCCACCuGCg -3'
miRNA:   3'- cCGUcCGGGcuauCCACCGGUGG-CGg -5'
18250 5' -61.2 NC_004681.1 + 64216 0.68 0.384635
Target:  5'- cGCAuGGUCUGGggcgAGGaUGGCCGCUGgCa -3'
miRNA:   3'- cCGU-CCGGGCUa---UCC-ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 49566 0.7 0.31715
Target:  5'- gGGCAGGCCCGAggcaccaacgacUgcaucAGGcgGGCCAagaaggcgcagauucCCGUCg -3'
miRNA:   3'- -CCGUCCGGGCU------------A-----UCCa-CCGGU---------------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18382 0.7 0.286228
Target:  5'- uGGCAGGCC----AGGcGGCgGCCGCg -3'
miRNA:   3'- -CCGUCCGGgcuaUCCaCCGgUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 64346 0.71 0.260224
Target:  5'- uGGCgaagaagugAGGCCCGcggacaaggcGUGGGcgacaaUGGCCACCGgCa -3'
miRNA:   3'- -CCG---------UCCGGGC----------UAUCC------ACCGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 23450 0.75 0.135293
Target:  5'- cGCAGuuCUGAUGGGUcGGgCGCCGCCa -3'
miRNA:   3'- cCGUCcgGGCUAUCCA-CCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 16338 0.75 0.142146
Target:  5'- aGCAGGCCaucuccgcugcggCGGUGGGUGGCgACgagggCGCCa -3'
miRNA:   3'- cCGUCCGG-------------GCUAUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 23590 0.74 0.16634
Target:  5'- gGGCuacgaGGGCaCGG-GGGUGGCCAuCCGCCu -3'
miRNA:   3'- -CCG-----UCCGgGCUaUCCACCGGU-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 45571 0.73 0.188863
Target:  5'- aGCAGguggacaucGCCCGcaAGGUGGCCGgUGCCu -3'
miRNA:   3'- cCGUC---------CGGGCuaUCCACCGGUgGCGG- -5'
18250 5' -61.2 NC_004681.1 + 20433 0.72 0.212965
Target:  5'- -uCAGGCgCGAccaucgacagcaAGGUGGUCGCCGCCc -3'
miRNA:   3'- ccGUCCGgGCUa-----------UCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23345 0.72 0.22487
Target:  5'- cGGCAGcuucaggcGCCCGA--GGUGGUCAaccuccugcCCGCCu -3'
miRNA:   3'- -CCGUC--------CGGGCUauCCACCGGU---------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 64917 0.72 0.229337
Target:  5'- cGCGGcGCCCGccuggagcacgAGGUGGCgACgCGCCu -3'
miRNA:   3'- cCGUC-CGGGCua---------UCCACCGgUG-GCGG- -5'
18250 5' -61.2 NC_004681.1 + 48504 0.72 0.230466
Target:  5'- cGCGGagaaCCCGGagcGGGUGGCgCACUGCCa -3'
miRNA:   3'- cCGUCc---GGGCUa--UCCACCG-GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.