miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 1482 1.13 0.00023
Target:  5'- cGGCAGGCCCGAUAGGUGGCCACCGCCu -3'
miRNA:   3'- -CCGUCCGGGCUAUCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 16500 0.68 0.368119
Target:  5'- cGCAuGGCCUGGUcacccuuggAGGUGGCCGagGCa -3'
miRNA:   3'- cCGU-CCGGGCUA---------UCCACCGGUggCGg -5'
18250 5' -61.2 NC_004681.1 + 42208 0.68 0.393075
Target:  5'- uGGCAucgucaaaguuGGCCCGGgagAGGuUGGCC-CCGa- -3'
miRNA:   3'- -CCGU-----------CCGGGCUa--UCC-ACCGGuGGCgg -5'
18250 5' -61.2 NC_004681.1 + 59282 0.66 0.53258
Target:  5'- cGGgAGGCCguccgUGAcaUAGGUGGCgACguaggUGCCg -3'
miRNA:   3'- -CCgUCCGG-----GCU--AUCCACCGgUG-----GCGG- -5'
18250 5' -61.2 NC_004681.1 + 32009 0.74 0.162134
Target:  5'- gGGaugAGGCCCGcgAuGGcGGCCGCCGCg -3'
miRNA:   3'- -CCg--UCCGGGCuaU-CCaCCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 39212 0.72 0.212436
Target:  5'- cGGCGGucgcggaagguguuGCCCGcgcAGGUGGCCACCaggGCUu -3'
miRNA:   3'- -CCGUC--------------CGGGCua-UCCACCGGUGG---CGG- -5'
18250 5' -61.2 NC_004681.1 + 2103 0.7 0.29998
Target:  5'- uGGCcgcGGCCgGAUGGGUgcugGGCCAaucaGCCc -3'
miRNA:   3'- -CCGu--CCGGgCUAUCCA----CCGGUgg--CGG- -5'
18250 5' -61.2 NC_004681.1 + 23768 0.7 0.309907
Target:  5'- aGGCGGGCgcguaggaggccagcUCGAUGGGcucacccGGCuCGCCGUCg -3'
miRNA:   3'- -CCGUCCG---------------GGCUAUCCa------CCG-GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18520 0.69 0.329002
Target:  5'- uGGaCAGcgauGCCCGAUccGGGUGcgaaggcguuuGCCGCCGCg -3'
miRNA:   3'- -CC-GUC----CGGGCUA--UCCAC-----------CGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 36379 0.68 0.368119
Target:  5'- gGGCGaacGG-CgGGUGGGUGGCgCACUGCg -3'
miRNA:   3'- -CCGU---CCgGgCUAUCCACCG-GUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 7458 0.69 0.344272
Target:  5'- cGCGGGCuuGGcGGGaGGCUucGCCGCg -3'
miRNA:   3'- cCGUCCGggCUaUCCaCCGG--UGGCGg -5'
18250 5' -61.2 NC_004681.1 + 9022 0.69 0.321556
Target:  5'- aGCAGGCCguUGAcgccgGGGUacCCGCCGCCa -3'
miRNA:   3'- cCGUCCGG--GCUa----UCCAccGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 20015 0.78 0.088628
Target:  5'- aGCAGGCCCGc--GGUGGCCuucaUGCCg -3'
miRNA:   3'- cCGUCCGGGCuauCCACCGGug--GCGG- -5'
18250 5' -61.2 NC_004681.1 + 62093 0.69 0.35526
Target:  5'- aGUAGGCCgCGAUcuggucgaacAGGUGcaugcccgcgaugacGCUGCCGCCc -3'
miRNA:   3'- cCGUCCGG-GCUA----------UCCAC---------------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 41155 0.75 0.137781
Target:  5'- cGGCGgcGGCgCCGAagagggccgucgcaUGGGUGGCUACCcuGCCg -3'
miRNA:   3'- -CCGU--CCG-GGCU--------------AUCCACCGGUGG--CGG- -5'
18250 5' -61.2 NC_004681.1 + 52956 0.69 0.321556
Target:  5'- gGGCAGG-CCGAUGGccaGCCuuCCGCCc -3'
miRNA:   3'- -CCGUCCgGGCUAUCcacCGGu-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 59800 0.69 0.358445
Target:  5'- uGGCAGGCCgcacucccagcaGggGGcGUGGCggCGCUGCCa -3'
miRNA:   3'- -CCGUCCGGg-----------CuaUC-CACCG--GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 39998 0.68 0.376316
Target:  5'- aGGCuGGCCgCGcgcUGGG-GGUCuCCGCCc -3'
miRNA:   3'- -CCGuCCGG-GCu--AUCCaCCGGuGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 68991 0.74 0.15401
Target:  5'- uGGuCAGcGCCuCGAUGGcGUcGGCCGCgGCCa -3'
miRNA:   3'- -CC-GUC-CGG-GCUAUC-CA-CCGGUGgCGG- -5'
18250 5' -61.2 NC_004681.1 + 846 0.71 0.260224
Target:  5'- cGGCAgGGCCgGGUAGGccGUCACCaGUCg -3'
miRNA:   3'- -CCGU-CCGGgCUAUCCacCGGUGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.