miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18250 5' -61.2 NC_004681.1 + 17938 0.66 0.482716
Target:  5'- gGGC--GCCCGGguuGGUgaGGCCggugccuugcgcgGCCGCCg -3'
miRNA:   3'- -CCGucCGGGCUau-CCA--CCGG-------------UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 17939 0.68 0.401635
Target:  5'- cGCAGGUgagugCCGAgggcGGcuccgugGGCCACCGCa -3'
miRNA:   3'- cCGUCCG-----GGCUau--CCa------CCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 18122 0.66 0.53258
Target:  5'- cGGcCAGGCaCCGGgucAGGUcGGCCcguuccccaCGCCc -3'
miRNA:   3'- -CC-GUCCG-GGCUa--UCCA-CCGGug-------GCGG- -5'
18250 5' -61.2 NC_004681.1 + 18329 0.69 0.342722
Target:  5'- aGGCGGuuucggagucugcccGCCCGGUacacccggGGGUGcGCCgggaggcgcuccaggACCGCCa -3'
miRNA:   3'- -CCGUC---------------CGGGCUA--------UCCAC-CGG---------------UGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18344 0.66 0.53258
Target:  5'- uGGCGGGCUCGGguucacccccGGUGgcGCCAUCGaCa -3'
miRNA:   3'- -CCGUCCGGGCUau--------CCAC--CGGUGGCgG- -5'
18250 5' -61.2 NC_004681.1 + 18382 0.7 0.286228
Target:  5'- uGGCAGGCC----AGGcGGCgGCCGCg -3'
miRNA:   3'- -CCGUCCGGgcuaUCCaCCGgUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 18466 0.66 0.512781
Target:  5'- uGGCcuGCCauguCGAUggcgccaccggGGGUGaacccgagcccGCCACCGCCa -3'
miRNA:   3'- -CCGucCGG----GCUA-----------UCCAC-----------CGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 18520 0.69 0.329002
Target:  5'- uGGaCAGcgauGCCCGAUccGGGUGcgaaggcguuuGCCGCCGCg -3'
miRNA:   3'- -CC-GUC----CGGGCUA--UCCAC-----------CGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 20015 0.78 0.088628
Target:  5'- aGCAGGCCCGc--GGUGGCCuucaUGCCg -3'
miRNA:   3'- cCGUCCGGGCuauCCACCGGug--GCGG- -5'
18250 5' -61.2 NC_004681.1 + 20433 0.72 0.212965
Target:  5'- -uCAGGCgCGAccaucgacagcaAGGUGGUCGCCGCCc -3'
miRNA:   3'- ccGUCCGgGCUa-----------UCCACCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 21662 0.67 0.42801
Target:  5'- gGGUgauGGCCauuUAGGUggaauucggugaGGCCACCGCg -3'
miRNA:   3'- -CCGu--CCGGgcuAUCCA------------CCGGUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 23345 0.72 0.22487
Target:  5'- cGGCAGcuucaggcGCCCGA--GGUGGUCAaccuccugcCCGCCu -3'
miRNA:   3'- -CCGUC--------CGGGCUauCCACCGGU---------GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23450 0.75 0.135293
Target:  5'- cGCAGuuCUGAUGGGUcGGgCGCCGCCa -3'
miRNA:   3'- cCGUCcgGGCUAUCCA-CCgGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23552 0.66 0.503969
Target:  5'- uGGCGGcGCCCGAcccaucagaacugcgGGaGUGGCCGagGUCg -3'
miRNA:   3'- -CCGUC-CGGGCUa--------------UC-CACCGGUggCGG- -5'
18250 5' -61.2 NC_004681.1 + 23590 0.74 0.16634
Target:  5'- gGGCuacgaGGGCaCGG-GGGUGGCCAuCCGCCu -3'
miRNA:   3'- -CCG-----UCCGgGCUaUCCACCGGU-GGCGG- -5'
18250 5' -61.2 NC_004681.1 + 23768 0.7 0.309907
Target:  5'- aGGCGGGCgcguaggaggccagcUCGAUGGGcucacccGGCuCGCCGUCg -3'
miRNA:   3'- -CCGUCCG---------------GGCUAUCCa------CCG-GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 25000 0.68 0.401634
Target:  5'- uGGCAGcuGCCCacuugccGG-GGUCGCCGCCc -3'
miRNA:   3'- -CCGUC--CGGGcuau---CCaCCGGUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 25843 0.67 0.464716
Target:  5'- cGGCAcGCCCGu--GGUGGagaUGCCGUa -3'
miRNA:   3'- -CCGUcCGGGCuauCCACCg--GUGGCGg -5'
18250 5' -61.2 NC_004681.1 + 29578 0.66 0.53258
Target:  5'- aGguGGuCCCGGUgAGGgacagGGUgaccgacuCACCGCCc -3'
miRNA:   3'- cCguCC-GGGCUA-UCCa----CCG--------GUGGCGG- -5'
18250 5' -61.2 NC_004681.1 + 30361 0.66 0.512781
Target:  5'- cGguGGUCuCGAcgccGUaccGGCCGCCGCCg -3'
miRNA:   3'- cCguCCGG-GCUauc-CA---CCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.