miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 30948 0.77 0.091384
Target:  5'- gCGGgcgGCGuGCCGUCCUCCACGAUgGguCCg -3'
miRNA:   3'- -GCCa--CGC-CGGCGGGAGGUGCUGgU--GG- -5'
18251 3' -62.8 NC_004681.1 + 31184 0.7 0.250663
Target:  5'- aGcGUGCGGacugCGUCCUgCCAguuCGGCCGCCa -3'
miRNA:   3'- gC-CACGCCg---GCGGGA-GGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 32124 0.73 0.173754
Target:  5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3'
miRNA:   3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5'
18251 3' -62.8 NC_004681.1 + 33860 0.69 0.302145
Target:  5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3'
miRNA:   3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 34710 0.69 0.288552
Target:  5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3'
miRNA:   3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35148 0.66 0.446103
Target:  5'- --cUGUGGuuGCCgUCCGCGGCgAgCa -3'
miRNA:   3'- gccACGCCggCGGgAGGUGCUGgUgG- -5'
18251 3' -62.8 NC_004681.1 + 35477 0.77 0.086702
Target:  5'- gCGGUGUGuacgccGUCGCCUUCCucCGACCACCc -3'
miRNA:   3'- -GCCACGC------CGGCGGGAGGu-GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 37675 0.66 0.473601
Target:  5'- ---aGCGGCCGCgcgucgcuUCUCCAauuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCG--------GGAGGUgcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 38214 0.66 0.464338
Target:  5'- uGGgGCGGCCGaagaCgUcCCGCGGCggCGCCa -3'
miRNA:   3'- gCCaCGCCGGCg---GgA-GGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 38331 0.66 0.446103
Target:  5'- aCGGUGCcuauggcGCCGCCgCgggacgUCUuCGGCCGCCc -3'
miRNA:   3'- -GCCACGc------CGGCGG-G------AGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 38934 0.69 0.309124
Target:  5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3'
miRNA:   3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39098 0.71 0.206636
Target:  5'- uGGUggccaccugcGCGGgCaacaCCUUCCGCGACCGCCg -3'
miRNA:   3'- gCCA----------CGCCgGc---GGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39255 0.68 0.338265
Target:  5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3'
miRNA:   3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39349 0.68 0.353568
Target:  5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3'
miRNA:   3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 40241 0.66 0.464338
Target:  5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3'
miRNA:   3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40340 0.71 0.238978
Target:  5'- uGGUGUGGuuGCUCgUCUAUGGCUcCCg -3'
miRNA:   3'- gCCACGCCggCGGG-AGGUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 40630 0.69 0.288552
Target:  5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 41126 0.68 0.353568
Target:  5'- uGG-GUGGCUaCCCUgCCGCGAuggauggcaagcCCACCa -3'
miRNA:   3'- gCCaCGCCGGcGGGA-GGUGCU------------GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 41559 0.67 0.41952
Target:  5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3'
miRNA:   3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 44137 0.66 0.473601
Target:  5'- aGGccGCgGGCCugGCCCUCaC-CGGCCGCg -3'
miRNA:   3'- gCCa-CG-CCGG--CGGGAG-GuGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.