miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 16241 0.67 0.41952
Target:  5'- aCGG-GaUGGCCGCCagcgCCGCGAa-GCCg -3'
miRNA:   3'- -GCCaC-GCCGGCGGga--GGUGCUggUGG- -5'
18251 3' -62.8 NC_004681.1 + 16304 0.67 0.393919
Target:  5'- aGGcGUGGCCGUUCUgCuuGGCCugCu -3'
miRNA:   3'- gCCaCGCCGGCGGGAgGugCUGGugG- -5'
18251 3' -62.8 NC_004681.1 + 16526 0.73 0.169456
Target:  5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3'
miRNA:   3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 17497 0.73 0.171164
Target:  5'- uGGgGCGGCCGUCCaugauguugacgaggUCCuCGACCGCg -3'
miRNA:   3'- gCCaCGCCGGCGGG---------------AGGuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 17926 0.77 0.086702
Target:  5'- uGGUGaGGCCgguGCCUUgCGCGGCCGCCg -3'
miRNA:   3'- gCCACgCCGG---CGGGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18056 0.67 0.41865
Target:  5'- gGGcUGCGgggcccaccggaGCCGCCCUCgGCacucaccugcgggGACCGCUu -3'
miRNA:   3'- gCC-ACGC------------CGGCGGGAGgUG-------------CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18293 0.74 0.149367
Target:  5'- gGGUGC-GCCgggagGCgCUCCAgGACCGCCa -3'
miRNA:   3'- gCCACGcCGG-----CGgGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18500 0.73 0.165254
Target:  5'- gGGUGCgaaGGCguuUGCCg-CCGCGGCCGCCg -3'
miRNA:   3'- gCCACG---CCG---GCGGgaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 19785 0.67 0.393919
Target:  5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3'
miRNA:   3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 19896 0.67 0.393919
Target:  5'- gCGGUacugGCGGCCGUUCUUaGCGgaGCCGCa -3'
miRNA:   3'- -GCCA----CGCCGGCGGGAGgUGC--UGGUGg -5'
18251 3' -62.8 NC_004681.1 + 20137 0.67 0.377424
Target:  5'- aGGUagcGCGGCCaCCCgUCCugGucuCCGCg -3'
miRNA:   3'- gCCA---CGCCGGcGGG-AGGugCu--GGUGg -5'
18251 3' -62.8 NC_004681.1 + 22517 0.71 0.238978
Target:  5'- gGGUGUagugcggagGGuuGCCgUCCGCGGCCggggugACCa -3'
miRNA:   3'- gCCACG---------CCggCGGgAGGUGCUGG------UGG- -5'
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24953 0.76 0.096304
Target:  5'- aGGgagccuugGCGGCCGCCgC-CCGCG-CCGCCg -3'
miRNA:   3'- gCCa-------CGCCGGCGG-GaGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25158 0.79 0.058222
Target:  5'- aGGUGCcgcccgcGCCGCCCUCUGCGGUCACCg -3'
miRNA:   3'- gCCACGc------CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25350 0.66 0.464338
Target:  5'- ---aGCGcacccaaccGCCGCCgCgggcgCCAUGGCCGCCg -3'
miRNA:   3'- gccaCGC---------CGGCGG-Ga----GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 27978 0.69 0.295287
Target:  5'- uGGU---GCCGCCCgagCCAUGuCCGCCa -3'
miRNA:   3'- gCCAcgcCGGCGGGa--GGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 28251 0.74 0.141956
Target:  5'- cCGGUGCcgcuGCCGCCgcucgaUCCGCcGCCGCCg -3'
miRNA:   3'- -GCCACGc---CGGCGGg-----AGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30259 0.7 0.253657
Target:  5'- aGGUccacuccGCGGCCGCgCCgccugagcccgacCCACaGGCCGCCu -3'
miRNA:   3'- gCCA-------CGCCGGCG-GGa------------GGUG-CUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.