miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 538 0.67 0.369352
Target:  5'- aGGUuggacgcccaGCGGagGCCCUCguCGuCCACCg -3'
miRNA:   3'- gCCA----------CGCCggCGGGAGguGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 2130 1.1 0.000278
Target:  5'- gCGGUGCGGCCGCCCUCCACGACCACCu -3'
miRNA:   3'- -GCCACGCCGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3017 0.7 0.26907
Target:  5'- gCGGUGCcGUCGCCCagCCA-GGCCcCCa -3'
miRNA:   3'- -GCCACGcCGGCGGGa-GGUgCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 3640 0.66 0.437137
Target:  5'- ---aGCaGGCCGCCCUCgCcuucgACGucGCCGCCc -3'
miRNA:   3'- gccaCG-CCGGCGGGAG-G-----UGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 5890 0.66 0.428275
Target:  5'- uGGgGCGGCCaGCguuCUUCCAC-AUCGCCg -3'
miRNA:   3'- gCCaCGCCGG-CG---GGAGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 6010 0.66 0.440711
Target:  5'- aGGUcuGCGGCgucuacgacauCGCCCcucccaucguccacaUCCugGACCguGCCa -3'
miRNA:   3'- gCCA--CGCCG-----------GCGGG---------------AGGugCUGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 7170 0.7 0.26907
Target:  5'- cCGGUGgGggguGCCGUCCUUCAUGG-CGCCg -3'
miRNA:   3'- -GCCACgC----CGGCGGGAGGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7301 0.68 0.330797
Target:  5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3'
miRNA:   3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7678 0.7 0.247109
Target:  5'- aGGUGCcaucacggccuccccGGCCGUCCUCCACcguguaGACgACa -3'
miRNA:   3'- gCCACG---------------CCGGCGGGAGGUG------CUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 8407 0.67 0.40234
Target:  5'- gGGaUGUcguuguccaGGCCGUCCuuggcggcgUCCGCG-CCACCg -3'
miRNA:   3'- gCC-ACG---------CCGGCGGG---------AGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 8518 0.77 0.086702
Target:  5'- aCGGUGaGaCCGCCC-CCGCGGCCAUCg -3'
miRNA:   3'- -GCCACgCcGGCGGGaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 9751 0.66 0.446103
Target:  5'- aGGUGaccCGGCC-CCCUCacgaACGucaGCUACCu -3'
miRNA:   3'- gCCAC---GCCGGcGGGAGg---UGC---UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 10298 0.68 0.3614
Target:  5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3'
miRNA:   3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5'
18251 3' -62.8 NC_004681.1 + 10730 0.67 0.369352
Target:  5'- uGGUGCuGGgCGUCC---GCGACCACUg -3'
miRNA:   3'- gCCACG-CCgGCGGGaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12602 0.7 0.250663
Target:  5'- gCGGUcucGCcguuGCUGCCUUCCGCGGUCACCu -3'
miRNA:   3'- -GCCA---CGc---CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12780 0.69 0.281937
Target:  5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3'
miRNA:   3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 14543 0.67 0.410874
Target:  5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3'
miRNA:   3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.