miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 60687 0.69 0.316226
Target:  5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3'
miRNA:   3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 50381 0.68 0.32345
Target:  5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3'
miRNA:   3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 39255 0.68 0.338265
Target:  5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3'
miRNA:   3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 10730 0.67 0.369352
Target:  5'- uGGUGCuGGgCGUCC---GCGACCACUg -3'
miRNA:   3'- gCCACG-CCgGCGGGaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45448 0.67 0.377424
Target:  5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3'
miRNA:   3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40630 0.69 0.288552
Target:  5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 34710 0.69 0.288552
Target:  5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3'
miRNA:   3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12780 0.69 0.281937
Target:  5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3'
miRNA:   3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 8518 0.77 0.086702
Target:  5'- aCGGUGaGaCCGCCC-CCGCGGCCAUCg -3'
miRNA:   3'- -GCCACgCcGGCGGGaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35477 0.77 0.086702
Target:  5'- gCGGUGUGuacgccGUCGCCUUCCucCGACCACCc -3'
miRNA:   3'- -GCCACGC------CGGCGGGAGGu-GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 58642 0.74 0.145619
Target:  5'- aGGUGUccugcgccacGGCCGCCUgcgCCGCgGGCCACa -3'
miRNA:   3'- gCCACG----------CCGGCGGGa--GGUG-CUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 16526 0.73 0.169456
Target:  5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3'
miRNA:   3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 32124 0.73 0.173754
Target:  5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3'
miRNA:   3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5'
18251 3' -62.8 NC_004681.1 + 45406 0.72 0.187235
Target:  5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3'
miRNA:   3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39098 0.71 0.206636
Target:  5'- uGGUggccaccugcGCGGgCaacaCCUUCCGCGACCGCCg -3'
miRNA:   3'- gCCA----------CGCCgGc---GGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 64718 0.7 0.262816
Target:  5'- uGGUG-GGuCCGCCCaCCugGaACUACCc -3'
miRNA:   3'- gCCACgCC-GGCGGGaGGugC-UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.