miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 2130 1.1 0.000278
Target:  5'- gCGGUGCGGCCGCCCUCCACGACCACCu -3'
miRNA:   3'- -GCCACGCCGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25158 0.79 0.058222
Target:  5'- aGGUGCcgcccgcGCCGCCCUCUGCGGUCACCg -3'
miRNA:   3'- gCCACGc------CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61738 0.78 0.077399
Target:  5'- aGGa--GGCCGCCCUcgcgcgccaccagaCCGCGGCCGCCa -3'
miRNA:   3'- gCCacgCCGGCGGGA--------------GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 51829 0.77 0.080106
Target:  5'- cCGGgGCGGCCGCCg---ACGACCACCa -3'
miRNA:   3'- -GCCaCGCCGGCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 8518 0.77 0.086702
Target:  5'- aCGGUGaGaCCGCCC-CCGCGGCCAUCg -3'
miRNA:   3'- -GCCACgCcGGCGGGaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 17926 0.77 0.086702
Target:  5'- uGGUGaGGCCgguGCCUUgCGCGGCCGCCg -3'
miRNA:   3'- gCCACgCCGG---CGGGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 35477 0.77 0.086702
Target:  5'- gCGGUGUGuacgccGUCGCCUUCCucCGACCACCc -3'
miRNA:   3'- -GCCACGC------CGGCGGGAGGu-GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30948 0.77 0.091384
Target:  5'- gCGGgcgGCGuGCCGUCCUCCACGAUgGguCCg -3'
miRNA:   3'- -GCCa--CGC-CGGCGGGAGGUGCUGgU--GG- -5'
18251 3' -62.8 NC_004681.1 + 24953 0.76 0.096304
Target:  5'- aGGgagccuugGCGGCCGCCgC-CCGCG-CCGCCg -3'
miRNA:   3'- gCCa-------CGCCGGCGG-GaGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 28251 0.74 0.141956
Target:  5'- cCGGUGCcgcuGCCGCCgcucgaUCCGCcGCCGCCg -3'
miRNA:   3'- -GCCACGc---CGGCGGg-----AGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 58642 0.74 0.145619
Target:  5'- aGGUGUccugcgccacGGCCGCCUgcgCCGCgGGCCACa -3'
miRNA:   3'- gCCACG----------CCGGCGGGa--GGUG-CUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 18293 0.74 0.149367
Target:  5'- gGGUGC-GCCgggagGCgCUCCAgGACCGCCa -3'
miRNA:   3'- gCCACGcCGG-----CGgGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18500 0.73 0.165254
Target:  5'- gGGUGCgaaGGCguuUGCCg-CCGCGGCCGCCg -3'
miRNA:   3'- gCCACG---CCG---GCGGgaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 16526 0.73 0.169456
Target:  5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3'
miRNA:   3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 17497 0.73 0.171164
Target:  5'- uGGgGCGGCCGUCCaugauguugacgaggUCCuCGACCGCg -3'
miRNA:   3'- gCCaCGCCGGCGGG---------------AGGuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 32124 0.73 0.173754
Target:  5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3'
miRNA:   3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5'
18251 3' -62.8 NC_004681.1 + 65183 0.73 0.173754
Target:  5'- --uUGCcaGGCCGaCCUCgGCGACCACCc -3'
miRNA:   3'- gccACG--CCGGCgGGAGgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45406 0.72 0.187235
Target:  5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3'
miRNA:   3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39098 0.71 0.206636
Target:  5'- uGGUggccaccugcGCGGgCaacaCCUUCCGCGACCGCCg -3'
miRNA:   3'- gCCA----------CGCCgGc---GGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40340 0.71 0.238978
Target:  5'- uGGUGUGGuuGCUCgUCUAUGGCUcCCg -3'
miRNA:   3'- gCCACGCCggCGGG-AGGUGCUGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.