miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 40340 0.71 0.238978
Target:  5'- uGGUGUGGuuGCUCgUCUAUGGCUcCCg -3'
miRNA:   3'- gCCACGCCggCGGG-AGGUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 62618 0.7 0.244762
Target:  5'- uCGGagGCGGCUGCCagggugcCCAUGGCCuggGCCa -3'
miRNA:   3'- -GCCa-CGCCGGCGGga-----GGUGCUGG---UGG- -5'
18251 3' -62.8 NC_004681.1 + 7678 0.7 0.247109
Target:  5'- aGGUGCcaucacggccuccccGGCCGUCCUCCACcguguaGACgACa -3'
miRNA:   3'- gCCACG---------------CCGGCGGGAGGUG------CUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 31184 0.7 0.250663
Target:  5'- aGcGUGCGGacugCGUCCUgCCAguuCGGCCGCCa -3'
miRNA:   3'- gC-CACGCCg---GCGGGA-GGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12602 0.7 0.250663
Target:  5'- gCGGUcucGCcguuGCUGCCUUCCGCGGUCACCu -3'
miRNA:   3'- -GCCA---CGc---CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30259 0.7 0.253657
Target:  5'- aGGUccacuccGCGGCCGCgCCgccugagcccgacCCACaGGCCGCCu -3'
miRNA:   3'- gCCA-------CGCCGGCG-GGa------------GGUG-CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 50474 0.7 0.262816
Target:  5'- uGGUaGCGguaGCCGCCCUcgaCCACGucCCACa -3'
miRNA:   3'- gCCA-CGC---CGGCGGGA---GGUGCu-GGUGg -5'
18251 3' -62.8 NC_004681.1 + 64718 0.7 0.262816
Target:  5'- uGGUG-GGuCCGCCCaCCugGaACUACCc -3'
miRNA:   3'- gCCACgCC-GGCGGGaGGugC-UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 3017 0.7 0.26907
Target:  5'- gCGGUGCcGUCGCCCagCCA-GGCCcCCa -3'
miRNA:   3'- -GCCACGcCGGCGGGa-GGUgCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 7170 0.7 0.26907
Target:  5'- cCGGUGgGggguGCCGUCCUUCAUGG-CGCCg -3'
miRNA:   3'- -GCCACgC----CGGCGGGAGGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12780 0.69 0.281937
Target:  5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3'
miRNA:   3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 46173 0.69 0.281937
Target:  5'- gCGGcuucGCGGCCGaCUUCCAUGuCCAgCCa -3'
miRNA:   3'- -GCCa---CGCCGGCgGGAGGUGCuGGU-GG- -5'
18251 3' -62.8 NC_004681.1 + 34710 0.69 0.288552
Target:  5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3'
miRNA:   3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40630 0.69 0.288552
Target:  5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 27978 0.69 0.295287
Target:  5'- uGGU---GCCGCCCgagCCAUGuCCGCCa -3'
miRNA:   3'- gCCAcgcCGGCGGGa--GGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 33860 0.69 0.302145
Target:  5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3'
miRNA:   3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61409 0.69 0.309124
Target:  5'- aCGGUGCGcuuGUCGCCCUCCuuggucucgaAgGAgCGCUg -3'
miRNA:   3'- -GCCACGC---CGGCGGGAGG----------UgCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 38934 0.69 0.309124
Target:  5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3'
miRNA:   3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 60687 0.69 0.316226
Target:  5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3'
miRNA:   3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.