miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 60019 0.66 0.427394
Target:  5'- cCGGUG-GGCaccugcuCGCCUUCgGCGGCUcCCg -3'
miRNA:   3'- -GCCACgCCG-------GCGGGAGgUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 16241 0.67 0.41952
Target:  5'- aCGG-GaUGGCCGCCagcgCCGCGAa-GCCg -3'
miRNA:   3'- -GCCaC-GCCGGCGGga--GGUGCUggUGG- -5'
18251 3' -62.8 NC_004681.1 + 41559 0.67 0.41952
Target:  5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3'
miRNA:   3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61766 0.67 0.41952
Target:  5'- ---gGCGGCgG-CCUCCGCGGCgGCg -3'
miRNA:   3'- gccaCGCCGgCgGGAGGUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 47191 0.67 0.41952
Target:  5'- gCGGcgGCGGCuCGUCCUuggguUCGCGGCgGCg -3'
miRNA:   3'- -GCCa-CGCCG-GCGGGA-----GGUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 18056 0.67 0.41865
Target:  5'- gGGcUGCGgggcccaccggaGCCGCCCUCgGCacucaccugcgggGACCGCUu -3'
miRNA:   3'- gCC-ACGC------------CGGCGGGAGgUG-------------CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 14543 0.67 0.410874
Target:  5'- aCGGggucgGCaucGCCGCCaccgccaCCACGGCCGCa -3'
miRNA:   3'- -GCCa----CGc--CGGCGGga-----GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 59105 0.67 0.407447
Target:  5'- gCGGUG-GG-CGCCCUCCcccacgaggucuuCGAgCACCu -3'
miRNA:   3'- -GCCACgCCgGCGGGAGGu------------GCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 8407 0.67 0.40234
Target:  5'- gGGaUGUcguuguccaGGCCGUCCuuggcggcgUCCGCG-CCACCg -3'
miRNA:   3'- gCC-ACG---------CCGGCGGG---------AGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 16304 0.67 0.393919
Target:  5'- aGGcGUGGCCGUUCUgCuuGGCCugCu -3'
miRNA:   3'- gCCaCGCCGGCGGGAgGugCUGGugG- -5'
18251 3' -62.8 NC_004681.1 + 19785 0.67 0.393919
Target:  5'- gGuGUGCGGCucCGCUaagaACGGCCGCCa -3'
miRNA:   3'- gC-CACGCCG--GCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 19896 0.67 0.393919
Target:  5'- gCGGUacugGCGGCCGUUCUUaGCGgaGCCGCa -3'
miRNA:   3'- -GCCA----CGCCGGCGGGAGgUGC--UGGUGg -5'
18251 3' -62.8 NC_004681.1 + 56124 0.67 0.382323
Target:  5'- aCGGUGaaggcgaugcggaGGUCGCCCUCCuugGCGuCgCGCUg -3'
miRNA:   3'- -GCCACg------------CCGGCGGGAGG---UGCuG-GUGG- -5'
18251 3' -62.8 NC_004681.1 + 20137 0.67 0.377424
Target:  5'- aGGUagcGCGGCCaCCCgUCCugGucuCCGCg -3'
miRNA:   3'- gCCA---CGCCGGcGGG-AGGugCu--GGUGg -5'
18251 3' -62.8 NC_004681.1 + 45448 0.67 0.377424
Target:  5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3'
miRNA:   3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24839 0.67 0.377424
Target:  5'- uCGGcGuCGGCgGCgCgggCgGCGGCCGCCa -3'
miRNA:   3'- -GCCaC-GCCGgCGgGa--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 74742 0.67 0.377424
Target:  5'- cCGGccGCGGgUGUCCUCCGCc-UCACCa -3'
miRNA:   3'- -GCCa-CGCCgGCGGGAGGUGcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 538 0.67 0.369352
Target:  5'- aGGUuggacgcccaGCGGagGCCCUCguCGuCCACCg -3'
miRNA:   3'- gCCA----------CGCCggCGGGAGguGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45364 0.67 0.369352
Target:  5'- aCGG-GCgGGgCGUCCggugcugCCACGAgCACCu -3'
miRNA:   3'- -GCCaCG-CCgGCGGGa------GGUGCUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.