miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 29465 0.67 0.369352
Target:  5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3'
miRNA:   3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 538 0.67 0.369352
Target:  5'- aGGUuggacgcccaGCGGagGCCCUCguCGuCCACCg -3'
miRNA:   3'- gCCA----------CGCCggCGGGAGguGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7263 0.67 0.369352
Target:  5'- ---cGCGGCCGUccaCCUCgGCGccgagugcGCCGCCu -3'
miRNA:   3'- gccaCGCCGGCG---GGAGgUGC--------UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 10298 0.68 0.3614
Target:  5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3'
miRNA:   3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5'
18251 3' -62.8 NC_004681.1 + 39349 0.68 0.353568
Target:  5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3'
miRNA:   3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 41126 0.68 0.353568
Target:  5'- uGG-GUGGCUaCCCUgCCGCGAuggauggcaagcCCACCa -3'
miRNA:   3'- gCCaCGCCGGcGGGA-GGUGCU------------GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39255 0.68 0.338265
Target:  5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3'
miRNA:   3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 62982 0.68 0.338265
Target:  5'- uGGUGCGGa-GCuCUUCCA-GGCCGCUu -3'
miRNA:   3'- gCCACGCCggCG-GGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7301 0.68 0.330797
Target:  5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3'
miRNA:   3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 48859 0.68 0.330797
Target:  5'- aGGUGUaGCCGCCgUCCugGagguGCUggACCa -3'
miRNA:   3'- gCCACGcCGGCGGgAGGugC----UGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 50381 0.68 0.32345
Target:  5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3'
miRNA:   3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 511 0.68 0.32345
Target:  5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3'
miRNA:   3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 60687 0.69 0.316226
Target:  5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3'
miRNA:   3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 38934 0.69 0.309124
Target:  5'- -----aGGuaGCCCUCCACGcuGCCGCCg -3'
miRNA:   3'- gccacgCCggCGGGAGGUGC--UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61409 0.69 0.309124
Target:  5'- aCGGUGCGcuuGUCGCCCUCCuuggucucgaAgGAgCGCUg -3'
miRNA:   3'- -GCCACGC---CGGCGGGAGG----------UgCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 33860 0.69 0.302145
Target:  5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3'
miRNA:   3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 27978 0.69 0.295287
Target:  5'- uGGU---GCCGCCCgagCCAUGuCCGCCa -3'
miRNA:   3'- gCCAcgcCGGCGGGa--GGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40630 0.69 0.288552
Target:  5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 34710 0.69 0.288552
Target:  5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3'
miRNA:   3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 12780 0.69 0.281937
Target:  5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3'
miRNA:   3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.