miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 2130 1.1 0.000278
Target:  5'- gCGGUGCGGCCGCCCUCCACGACCACCu -3'
miRNA:   3'- -GCCACGCCGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30259 0.7 0.253657
Target:  5'- aGGUccacuccGCGGCCGCgCCgccugagcccgacCCACaGGCCGCCu -3'
miRNA:   3'- gCCA-------CGCCGGCG-GGa------------GGUG-CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7170 0.7 0.26907
Target:  5'- cCGGUGgGggguGCCGUCCUUCAUGG-CGCCg -3'
miRNA:   3'- -GCCACgC----CGGCGGGAGGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40241 0.66 0.464338
Target:  5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3'
miRNA:   3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30948 0.77 0.091384
Target:  5'- gCGGgcgGCGuGCCGUCCUCCACGAUgGguCCg -3'
miRNA:   3'- -GCCa--CGC-CGGCGGGAGGUGCUGgU--GG- -5'
18251 3' -62.8 NC_004681.1 + 24953 0.76 0.096304
Target:  5'- aGGgagccuugGCGGCCGCCgC-CCGCG-CCGCCg -3'
miRNA:   3'- gCCa-------CGCCGGCGG-GaGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18293 0.74 0.149367
Target:  5'- gGGUGC-GCCgggagGCgCUCCAgGACCGCCa -3'
miRNA:   3'- gCCACGcCGG-----CGgGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18500 0.73 0.165254
Target:  5'- gGGUGCgaaGGCguuUGCCg-CCGCGGCCGCCg -3'
miRNA:   3'- gCCACG---CCG---GCGGgaGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40340 0.71 0.238978
Target:  5'- uGGUGUGGuuGCUCgUCUAUGGCUcCCg -3'
miRNA:   3'- gCCACGCCggCGGG-AGGUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 12602 0.7 0.250663
Target:  5'- gCGGUcucGCcguuGCUGCCUUCCGCGGUCACCu -3'
miRNA:   3'- -GCCA---CGc---CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 62618 0.7 0.244762
Target:  5'- uCGGagGCGGCUGCCagggugcCCAUGGCCuggGCCa -3'
miRNA:   3'- -GCCa-CGCCGGCGGga-----GGUGCUGG---UGG- -5'
18251 3' -62.8 NC_004681.1 + 65183 0.73 0.173754
Target:  5'- --uUGCcaGGCCGaCCUCgGCGACCACCc -3'
miRNA:   3'- gccACG--CCGGCgGGAGgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 25158 0.79 0.058222
Target:  5'- aGGUGCcgcccgcGCCGCCCUCUGCGGUCACCg -3'
miRNA:   3'- gCCACGc------CGGCGGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7678 0.7 0.247109
Target:  5'- aGGUGCcaucacggccuccccGGCCGUCCUCCACcguguaGACgACa -3'
miRNA:   3'- gCCACG---------------CCGGCGGGAGGUG------CUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 51829 0.77 0.080106
Target:  5'- cCGGgGCGGCCGCCg---ACGACCACCa -3'
miRNA:   3'- -GCCaCGCCGGCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 17497 0.73 0.171164
Target:  5'- uGGgGCGGCCGUCCaugauguugacgaggUCCuCGACCGCg -3'
miRNA:   3'- gCCaCGCCGGCGGG---------------AGGuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 31184 0.7 0.250663
Target:  5'- aGcGUGCGGacugCGUCCUgCCAguuCGGCCGCCa -3'
miRNA:   3'- gC-CACGCCg---GCGGGA-GGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 50474 0.7 0.262816
Target:  5'- uGGUaGCGguaGCCGCCCUcgaCCACGucCCACa -3'
miRNA:   3'- gCCA-CGC---CGGCGGGA---GGUGCu-GGUGg -5'
18251 3' -62.8 NC_004681.1 + 17926 0.77 0.086702
Target:  5'- uGGUGaGGCCgguGCCUUgCGCGGCCGCCg -3'
miRNA:   3'- gCCACgCCGG---CGGGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 28251 0.74 0.141956
Target:  5'- cCGGUGCcgcuGCCGCCgcucgaUCCGCcGCCGCCg -3'
miRNA:   3'- -GCCACGc---CGGCGGg-----AGGUGcUGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.