miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 74742 0.67 0.377424
Target:  5'- cCGGccGCGGgUGUCCUCCGCc-UCACCa -3'
miRNA:   3'- -GCCa-CGCCgGCGGGAGGUGcuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 69105 0.66 0.464338
Target:  5'- uGGUGUGaagcGCCGCCUcgcCCGCGcCCugGCCu -3'
miRNA:   3'- gCCACGC----CGGCGGGa--GGUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 67347 0.66 0.437137
Target:  5'- gCGGUGCGGCggggccagcuUGUUCUUgACGACuuuCACCc -3'
miRNA:   3'- -GCCACGCCG----------GCGGGAGgUGCUG---GUGG- -5'
18251 3' -62.8 NC_004681.1 + 65183 0.73 0.173754
Target:  5'- --uUGCcaGGCCGaCCUCgGCGACCACCc -3'
miRNA:   3'- gccACG--CCGGCgGGAGgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 64718 0.7 0.262816
Target:  5'- uGGUG-GGuCCGCCCaCCugGaACUACCc -3'
miRNA:   3'- gCCACgCC-GGCGGGaGGugC-UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 62982 0.68 0.338265
Target:  5'- uGGUGCGGa-GCuCUUCCA-GGCCGCUu -3'
miRNA:   3'- gCCACGCCggCG-GGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 62618 0.7 0.244762
Target:  5'- uCGGagGCGGCUGCCagggugcCCAUGGCCuggGCCa -3'
miRNA:   3'- -GCCa-CGCCGGCGGga-----GGUGCUGG---UGG- -5'
18251 3' -62.8 NC_004681.1 + 61766 0.67 0.41952
Target:  5'- ---gGCGGCgG-CCUCCGCGGCgGCg -3'
miRNA:   3'- gccaCGCCGgCgGGAGGUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 61738 0.78 0.077399
Target:  5'- aGGa--GGCCGCCCUcgcgcgccaccagaCCGCGGCCGCCa -3'
miRNA:   3'- gCCacgCCGGCGGGA--------------GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 61409 0.69 0.309124
Target:  5'- aCGGUGCGcuuGUCGCCCUCCuuggucucgaAgGAgCGCUg -3'
miRNA:   3'- -GCCACGC---CGGCGGGAGG----------UgCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 60687 0.69 0.316226
Target:  5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3'
miRNA:   3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 60019 0.66 0.427394
Target:  5'- cCGGUG-GGCaccugcuCGCCUUCgGCGGCUcCCg -3'
miRNA:   3'- -GCCACgCCG-------GCGGGAGgUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 59105 0.67 0.407447
Target:  5'- gCGGUG-GG-CGCCCUCCcccacgaggucuuCGAgCACCu -3'
miRNA:   3'- -GCCACgCCgGCGGGAGGu------------GCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 58642 0.74 0.145619
Target:  5'- aGGUGUccugcgccacGGCCGCCUgcgCCGCgGGCCACa -3'
miRNA:   3'- gCCACG----------CCGGCGGGa--GGUG-CUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 56124 0.67 0.382323
Target:  5'- aCGGUGaaggcgaugcggaGGUCGCCCUCCuugGCGuCgCGCUg -3'
miRNA:   3'- -GCCACg------------CCGGCGGGAGG---UGCuG-GUGG- -5'
18251 3' -62.8 NC_004681.1 + 55979 0.66 0.446103
Target:  5'- cCGGUGCucGGCUgccagGCCCUCacgcagCGCGA-CGCCa -3'
miRNA:   3'- -GCCACG--CCGG-----CGGGAG------GUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 51829 0.77 0.080106
Target:  5'- cCGGgGCGGCCGCCg---ACGACCACCa -3'
miRNA:   3'- -GCCaCGCCGGCGGgaggUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 51030 0.66 0.464338
Target:  5'- aGG-GCGucaUCGCCCUCgGCGACgGCg -3'
miRNA:   3'- gCCaCGCc--GGCGGGAGgUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 50474 0.7 0.262816
Target:  5'- uGGUaGCGguaGCCGCCCUcgaCCACGucCCACa -3'
miRNA:   3'- gCCA-CGC---CGGCGGGA---GGUGCu-GGUGg -5'
18251 3' -62.8 NC_004681.1 + 50381 0.68 0.32345
Target:  5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3'
miRNA:   3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.