miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18252 5' -55.3 NC_004681.1 + 31225 0.66 0.821861
Target:  5'- uGAUggCCAUCUUGgGaugcGGugUGCCg -3'
miRNA:   3'- cCUGagGGUAGAACgCgu--CCugACGG- -5'
18252 5' -55.3 NC_004681.1 + 32880 0.66 0.821861
Target:  5'- cGGACUCCUGguaCgaGCgGCccagcGGAUUGCCg -3'
miRNA:   3'- -CCUGAGGGUa--GaaCG-CGu----CCUGACGG- -5'
18252 5' -55.3 NC_004681.1 + 39789 0.66 0.80353
Target:  5'- cGGAagggCCaUAUCUuuuUGUGCGGGcaauuGCUGCCu -3'
miRNA:   3'- -CCUga--GG-GUAGA---ACGCGUCC-----UGACGG- -5'
18252 5' -55.3 NC_004681.1 + 72576 0.66 0.794104
Target:  5'- cGGAgUCaaCCAU--UGCGC-GGACUGCa -3'
miRNA:   3'- -CCUgAG--GGUAgaACGCGuCCUGACGg -5'
18252 5' -55.3 NC_004681.1 + 72252 0.66 0.784516
Target:  5'- uGGACUCCacgaugGCGCGGuauucggcaGCUGCCu -3'
miRNA:   3'- -CCUGAGGguagaaCGCGUCc--------UGACGG- -5'
18252 5' -55.3 NC_004681.1 + 17792 0.66 0.774777
Target:  5'- uGGCgaaCCGUCgagGCGUagucGGGAgCUGCCg -3'
miRNA:   3'- cCUGag-GGUAGaa-CGCG----UCCU-GACGG- -5'
18252 5' -55.3 NC_004681.1 + 8980 0.67 0.754887
Target:  5'- uGGAC-CUCuucCUUGCGCuGGA-UGCCu -3'
miRNA:   3'- -CCUGaGGGua-GAACGCGuCCUgACGG- -5'
18252 5' -55.3 NC_004681.1 + 49615 0.67 0.724183
Target:  5'- aGAUUCCCGUCgucguccgGUGaacgagaAGGAgUGCCg -3'
miRNA:   3'- cCUGAGGGUAGaa------CGCg------UCCUgACGG- -5'
18252 5' -55.3 NC_004681.1 + 36892 0.67 0.724183
Target:  5'- aGGACUgCCUAgucaGCGgGGGGCggGCCa -3'
miRNA:   3'- -CCUGA-GGGUagaaCGCgUCCUGa-CGG- -5'
18252 5' -55.3 NC_004681.1 + 323 0.68 0.70326
Target:  5'- cGGGCUgCCGgauuUC-UGCG-AGGGCUGCa -3'
miRNA:   3'- -CCUGAgGGU----AGaACGCgUCCUGACGg -5'
18252 5' -55.3 NC_004681.1 + 75195 0.68 0.692693
Target:  5'- cGGACUCaCCGUCgacaucCGCcuugAGGACaGCCc -3'
miRNA:   3'- -CCUGAG-GGUAGaac---GCG----UCCUGaCGG- -5'
18252 5' -55.3 NC_004681.1 + 48671 0.68 0.691633
Target:  5'- aGGGCguggCCCAcgaUGCaGCAGGgcuggguGCUGCCg -3'
miRNA:   3'- -CCUGa---GGGUagaACG-CGUCC-------UGACGG- -5'
18252 5' -55.3 NC_004681.1 + 49585 0.68 0.682071
Target:  5'- aGGAC-CCCGgcgaCUggGCaGUAGGGCuUGCCg -3'
miRNA:   3'- -CCUGaGGGUa---GAa-CG-CGUCCUG-ACGG- -5'
18252 5' -55.3 NC_004681.1 + 44296 0.69 0.628478
Target:  5'- uGGACUgCgCAUCggGUGUGGGACUGg- -3'
miRNA:   3'- -CCUGAgG-GUAGaaCGCGUCCUGACgg -5'
18252 5' -55.3 NC_004681.1 + 44918 0.69 0.606996
Target:  5'- gGGGCcgCCCGUCUcgaUGuCGUAGGuCUuGCCc -3'
miRNA:   3'- -CCUGa-GGGUAGA---AC-GCGUCCuGA-CGG- -5'
18252 5' -55.3 NC_004681.1 + 16412 0.7 0.585596
Target:  5'- cGGCUUCCGUCgauccgGcCGCGGGGaUGCCc -3'
miRNA:   3'- cCUGAGGGUAGaa----C-GCGUCCUgACGG- -5'
18252 5' -55.3 NC_004681.1 + 51077 0.7 0.576011
Target:  5'- cGGugUUCCAUUgacgcuuggcgucgGCGUAGGugUaGCCg -3'
miRNA:   3'- -CCugAGGGUAGaa------------CGCGUCCugA-CGG- -5'
18252 5' -55.3 NC_004681.1 + 71337 0.7 0.574948
Target:  5'- uGGCUCCg----UGUGCGuGGACUGCCu -3'
miRNA:   3'- cCUGAGGguagaACGCGU-CCUGACGG- -5'
18252 5' -55.3 NC_004681.1 + 18927 0.7 0.553794
Target:  5'- aGGCUCCCGUCgcgggaGCGCAGaACgGCUu -3'
miRNA:   3'- cCUGAGGGUAGaa----CGCGUCcUGaCGG- -5'
18252 5' -55.3 NC_004681.1 + 22287 0.71 0.512248
Target:  5'- uGGGCgcccugCCCGUCaugGCGCAGGGugaGCCc -3'
miRNA:   3'- -CCUGa-----GGGUAGaa-CGCGUCCUga-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.