Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18253 | 5' | -50 | NC_004681.1 | + | 4483 | 1.08 | 0.004769 |
Target: 5'- aAUCCAGUGUCGCCAAAGCAAAUCGACu -3' miRNA: 3'- -UAGGUCACAGCGGUUUCGUUUAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 40564 | 0.76 | 0.509663 |
Target: 5'- -aCCgAGcGUCGCCGAGGCAAAcggCGACa -3' miRNA: 3'- uaGG-UCaCAGCGGUUUCGUUUa--GCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 30986 | 0.73 | 0.655225 |
Target: 5'- cGUCCgcguacagGGUGUCGCgGGgcuccAGCGGGUCGGCg -3' miRNA: 3'- -UAGG--------UCACAGCGgUU-----UCGUUUAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 59947 | 0.72 | 0.733378 |
Target: 5'- -cCCGGcaGUCGCCGAGGUGGAUCaaGACa -3' miRNA: 3'- uaGGUCa-CAGCGGUUUCGUUUAG--CUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 66654 | 0.72 | 0.733378 |
Target: 5'- gAUCCGG---CGCCGAAGCGuuuAUCGACc -3' miRNA: 3'- -UAGGUCacaGCGGUUUCGUu--UAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 45109 | 0.71 | 0.775929 |
Target: 5'- -cCCAGUcaUUGCCGAAGCGGG-CGACg -3' miRNA: 3'- uaGGUCAc-AGCGGUUUCGUUUaGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 57859 | 0.71 | 0.786202 |
Target: 5'- --gCGGUGUCGCCuGAAGC---UCGGCg -3' miRNA: 3'- uagGUCACAGCGG-UUUCGuuuAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 6263 | 0.7 | 0.806222 |
Target: 5'- cUCCGGUGUCGCCAccccgaacgaGGGCcg--CGAg -3' miRNA: 3'- uAGGUCACAGCGGU----------UUCGuuuaGCUg -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 38971 | 0.69 | 0.86127 |
Target: 5'- cUCCAGUGgCGCCA--GCucuccuUCGACg -3' miRNA: 3'- uAGGUCACaGCGGUuuCGuuu---AGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 5790 | 0.69 | 0.869606 |
Target: 5'- cUCCAGcccgucaggGUUGaaGAAGCGGAUCGGCa -3' miRNA: 3'- uAGGUCa--------CAGCggUUUCGUUUAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 14923 | 0.69 | 0.869606 |
Target: 5'- uUCCAGUacgccuucgGUaaCGCCAAGGCGcccAUCGACc -3' miRNA: 3'- uAGGUCA---------CA--GCGGUUUCGUu--UAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 5570 | 0.68 | 0.92026 |
Target: 5'- cGUCaCGG-GUCGCCAucAAGCGcaacAGUCGAa -3' miRNA: 3'- -UAG-GUCaCAGCGGU--UUCGU----UUAGCUg -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 56577 | 0.68 | 0.92026 |
Target: 5'- -aCCGGgacGUUGCCGAcGCGAAUgGAUg -3' miRNA: 3'- uaGGUCa--CAGCGGUUuCGUUUAgCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 40069 | 0.68 | 0.92026 |
Target: 5'- -gCCGGUGaguugacccggCGCCGAcgcgcGCGGAUCGACu -3' miRNA: 3'- uaGGUCACa----------GCGGUUu----CGUUUAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 5042 | 0.68 | 0.92026 |
Target: 5'- cAUCCuGUugaacGUCGCCAAGGCcAAccuggaauUCGGCg -3' miRNA: 3'- -UAGGuCA-----CAGCGGUUUCGuUU--------AGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 3604 | 0.67 | 0.926342 |
Target: 5'- aGUCCGGUgaaaucuacggcGUCGCCcgcgacaaGAAGCAGGccgcccucgccuUCGACg -3' miRNA: 3'- -UAGGUCA------------CAGCGG--------UUUCGUUU------------AGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 56345 | 0.67 | 0.93213 |
Target: 5'- uGUCgaaGGUGUCGCCcucuuGCAGcucgcucggGUCGACg -3' miRNA: 3'- -UAGg--UCACAGCGGuuu--CGUU---------UAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 47489 | 0.67 | 0.942823 |
Target: 5'- cGUCgCAGgaccgcGUCGCCGuGGCGcGUUGGCg -3' miRNA: 3'- -UAG-GUCa-----CAGCGGUuUCGUuUAGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 16902 | 0.66 | 0.952355 |
Target: 5'- aGUCgGGUGUCGCCAccGAGgA---UGACa -3' miRNA: 3'- -UAGgUCACAGCGGU--UUCgUuuaGCUG- -5' |
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18253 | 5' | -50 | NC_004681.1 | + | 6922 | 0.66 | 0.956695 |
Target: 5'- cUUCAGgcUGUCGCCGucacGGUccAUCGACg -3' miRNA: 3'- uAGGUC--ACAGCGGUu---UCGuuUAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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