miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 33494 0.68 0.70073
Target:  5'- uGGCGCcGAuGCGGuucaggugccacacGGCGCGCgCGACg -3'
miRNA:   3'- uCCGCGaUUuCGUCu-------------UCGCGCG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 40089 0.68 0.70073
Target:  5'- cGGCGCUGguucaAGGCc-GAGCcggugaguugacccgGCGCCGACg -3'
miRNA:   3'- uCCGCGAU-----UUCGucUUCG---------------CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 38967 0.68 0.685488
Target:  5'- -cGCGgUGAAGCAGuucauGCGCugggugGCCGACg -3'
miRNA:   3'- ucCGCgAUUUCGUCuu---CGCG------CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 30405 0.68 0.685488
Target:  5'- -aGCGCUuuAuCGGAgAGCGCGUCGGCa -3'
miRNA:   3'- ucCGCGAuuUcGUCU-UCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 59651 0.68 0.674538
Target:  5'- cGGGCGUccGAAGCGGuGGGCuuccaGCCAACa -3'
miRNA:   3'- -UCCGCGa-UUUCGUC-UUCGcg---CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 62525 0.68 0.674538
Target:  5'- uGGGCgGCggagAGGGCGGugucGGCGC-CCAGCc -3'
miRNA:   3'- -UCCG-CGa---UUUCGUCu---UCGCGcGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 49472 0.68 0.663547
Target:  5'- uGGGUGCUucacGCAGAAgguGUGCGCCc-- -3'
miRNA:   3'- -UCCGCGAuuu-CGUCUU---CGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 21548 0.68 0.663547
Target:  5'- gGGGCGU--AGGCAuugccgggguuGAGGaacgGCGCCAGCa -3'
miRNA:   3'- -UCCGCGauUUCGU-----------CUUCg---CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 34830 0.68 0.652526
Target:  5'- aAGGgGCggcGGCcGAAGCGCGCgGGa -3'
miRNA:   3'- -UCCgCGauuUCGuCUUCGCGCGgUUg -5'
18254 3' -54.5 NC_004681.1 + 34539 0.68 0.652526
Target:  5'- cGGGCGCc---GCGGuGGCGCGCUu-- -3'
miRNA:   3'- -UCCGCGauuuCGUCuUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 43914 0.68 0.652526
Target:  5'- uGGUGCcguAGCGGggGUggGCGCgGACc -3'
miRNA:   3'- uCCGCGauuUCGUCuuCG--CGCGgUUG- -5'
18254 3' -54.5 NC_004681.1 + 14577 0.68 0.641487
Target:  5'- cAGcGCGCccugcucGGCGGAggcGGCGCGCgCGGCg -3'
miRNA:   3'- -UC-CGCGauu----UCGUCU---UCGCGCG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 73106 0.69 0.630439
Target:  5'- gGGGCGUacugcGCAGAGcaCGCGCCAAUc -3'
miRNA:   3'- -UCCGCGauuu-CGUCUUc-GCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 61171 0.69 0.630439
Target:  5'- cGGgGUc--GGCGGucAGCGUGCCGACg -3'
miRNA:   3'- uCCgCGauuUCGUCu-UCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 32962 0.69 0.629334
Target:  5'- cGGGUGCUucGGCAacccguaccgcgcGAAGgGUGUCAGCu -3'
miRNA:   3'- -UCCGCGAuuUCGU-------------CUUCgCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 36903 0.69 0.627124
Target:  5'- cGGCGacaaagaggacugcCUAGucAGCgGGggGCGgGCCAGCg -3'
miRNA:   3'- uCCGC--------------GAUU--UCG-UCuuCGCgCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 4516 0.69 0.619392
Target:  5'- cAGGCgguccaguuugGCUAGGGCAGAcucuggaauccAGUGuCGCCAAa -3'
miRNA:   3'- -UCCG-----------CGAUUUCGUCU-----------UCGC-GCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 6383 0.69 0.619392
Target:  5'- uGGCGCUGucGAGggggaGGAGGCcccgGCGCCGAa -3'
miRNA:   3'- uCCGCGAU--UUCg----UCUUCG----CGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 15232 0.69 0.619392
Target:  5'- uGGGCGUcaUGAAGCAGAucaaCGaCGCCAu- -3'
miRNA:   3'- -UCCGCG--AUUUCGUCUuc--GC-GCGGUug -5'
18254 3' -54.5 NC_004681.1 + 35744 0.69 0.608357
Target:  5'- cGGCGggAuuucguGUgucgGGAAGCGCGCCGAUg -3'
miRNA:   3'- uCCGCgaUuu----CG----UCUUCGCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.