miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 7360 0.66 0.760063
Target:  5'- cGGCGCcGAGGUGGAcGGCcGCGUCGu- -3'
miRNA:   3'- uCCGCGaUUUCGUCU-UCG-CGCGGUug -5'
18254 3' -54.5 NC_004681.1 + 25180 0.66 0.760063
Target:  5'- gAGGUGCcgagGAGGCugagcGAGGUGCcGCCcGCg -3'
miRNA:   3'- -UCCGCGa---UUUCGu----CUUCGCG-CGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 1197 0.66 0.759034
Target:  5'- gAGGCGCUcguagauGGCcuuGAGGCGCucgcgcuGCCAGg -3'
miRNA:   3'- -UCCGCGAuu-----UCGu--CUUCGCG-------CGGUUg -5'
18254 3' -54.5 NC_004681.1 + 36272 0.67 0.749713
Target:  5'- cGGGCGCgggAAAcGCuaauacGGGAGCuguGCGCCGAa -3'
miRNA:   3'- -UCCGCGa--UUU-CG------UCUUCG---CGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 69209 0.67 0.749713
Target:  5'- aGGGCGCg--GGC-GAGGCGgCGCUucACa -3'
miRNA:   3'- -UCCGCGauuUCGuCUUCGC-GCGGu-UG- -5'
18254 3' -54.5 NC_004681.1 + 30966 0.67 0.749713
Target:  5'- cGGgGCUccAGCGGGucggcgggcGGCGUGCCGu- -3'
miRNA:   3'- uCCgCGAuuUCGUCU---------UCGCGCGGUug -5'
18254 3' -54.5 NC_004681.1 + 25330 0.67 0.749713
Target:  5'- cGGGCGCcauGGCcgccguuguugaAGAAGCGgucgccgccguUGCCAGCg -3'
miRNA:   3'- -UCCGCGauuUCG------------UCUUCGC-----------GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 17404 0.67 0.739242
Target:  5'- -aGCGUccc-GCGGGcacGCGCGCCAGCa -3'
miRNA:   3'- ucCGCGauuuCGUCUu--CGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 61868 0.67 0.739242
Target:  5'- cGGCGUgAAgacuacucGGUGGAGGCGUGCCu-- -3'
miRNA:   3'- uCCGCGaUU--------UCGUCUUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 58481 0.67 0.737135
Target:  5'- uGGGCGCcgcgugaaccgcGAGGCAGuccAGGCGCuGCgCGACa -3'
miRNA:   3'- -UCCGCGa-----------UUUCGUC---UUCGCG-CG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 20158 0.67 0.728662
Target:  5'- aAGGUGCcggguccguAGCAGAgguAGCGCgGCCAc- -3'
miRNA:   3'- -UCCGCGauu------UCGUCU---UCGCG-CGGUug -5'
18254 3' -54.5 NC_004681.1 + 25371 0.67 0.728662
Target:  5'- cGGGCGaCUcaaccuuGUAGAAGCGCacCCAACc -3'
miRNA:   3'- -UCCGC-GAuuu----CGUCUUCGCGc-GGUUG- -5'
18254 3' -54.5 NC_004681.1 + 5458 0.67 0.728662
Target:  5'- uGGUGaacauGCacuucaccgGGAGGCGUGCCAGCg -3'
miRNA:   3'- uCCGCgauuuCG---------UCUUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 62957 0.67 0.728662
Target:  5'- cGGCGgUGGuGGCGGcGGCGgCGCgAGCa -3'
miRNA:   3'- uCCGCgAUU-UCGUCuUCGC-GCGgUUG- -5'
18254 3' -54.5 NC_004681.1 + 38182 0.67 0.717986
Target:  5'- gAGaGCGCUAu-GCGGAcuuGCgaGCGUCAGCg -3'
miRNA:   3'- -UC-CGCGAUuuCGUCUu--CG--CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 29810 0.67 0.707224
Target:  5'- cAGGCGCgGGAGCucGGcauccaacgcGGCGCGCUuGCc -3'
miRNA:   3'- -UCCGCGaUUUCGu-CU----------UCGCGCGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 51643 0.67 0.707224
Target:  5'- uGGCcaGCUuGGGCGauGAGCGCGUCGACc -3'
miRNA:   3'- uCCG--CGAuUUCGUc-UUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 41879 0.67 0.707224
Target:  5'- cGGCGCgAAGGCcgucgaaccuGGAGGCGUGCa--- -3'
miRNA:   3'- uCCGCGaUUUCG----------UCUUCGCGCGguug -5'
18254 3' -54.5 NC_004681.1 + 54130 0.67 0.707224
Target:  5'- cGGGCGCgc-GGCGGAcccucGUGgaaGCCAGCa -3'
miRNA:   3'- -UCCGCGauuUCGUCUu----CGCg--CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 51294 0.67 0.707224
Target:  5'- uGGCGUucuUGGAG-AGAAGCaugGCGCCGAg -3'
miRNA:   3'- uCCGCG---AUUUCgUCUUCG---CGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.