miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 20158 0.67 0.728662
Target:  5'- aAGGUGCcggguccguAGCAGAgguAGCGCgGCCAc- -3'
miRNA:   3'- -UCCGCGauu------UCGUCU---UCGCG-CGGUug -5'
18254 3' -54.5 NC_004681.1 + 21548 0.68 0.663547
Target:  5'- gGGGCGU--AGGCAuugccgggguuGAGGaacgGCGCCAGCa -3'
miRNA:   3'- -UCCGCGauUUCGU-----------CUUCg---CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 23789 0.66 0.80003
Target:  5'- cGGGCcacucuauguccGCgGAGGCGGgcGCGUaggagGCCAGCu -3'
miRNA:   3'- -UCCG------------CGaUUUCGUCuuCGCG-----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 24849 0.69 0.586358
Target:  5'- cGGCGCg--GGCGGcGGC-CGCCAAg -3'
miRNA:   3'- uCCGCGauuUCGUCuUCGcGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 24983 0.66 0.809606
Target:  5'- cGGGgGCUcuGGCGGcacAGGCGuCGgCGGCa -3'
miRNA:   3'- -UCCgCGAuuUCGUC---UUCGC-GCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 25180 0.66 0.760063
Target:  5'- gAGGUGCcgagGAGGCugagcGAGGUGCcGCCcGCg -3'
miRNA:   3'- -UCCGCGa---UUUCGu----CUUCGCG-CGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 25330 0.67 0.749713
Target:  5'- cGGGCGCcauGGCcgccguuguugaAGAAGCGgucgccgccguUGCCAGCg -3'
miRNA:   3'- -UCCGCGauuUCG------------UCUUCGC-----------GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 25371 0.67 0.728662
Target:  5'- cGGGCGaCUcaaccuuGUAGAAGCGCacCCAACc -3'
miRNA:   3'- -UCCGC-GAuuu----CGUCUUCGCGc-GGUUG- -5'
18254 3' -54.5 NC_004681.1 + 27623 0.7 0.553669
Target:  5'- uGGCGCUGGcGGCGGcGGCGgcucugguCGCCGAUc -3'
miRNA:   3'- uCCGCGAUU-UCGUCuUCGC--------GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 27782 0.76 0.251497
Target:  5'- cGGCGCUAAGGUgcucacuucuggAGAugggcgcGGCgGCGCCAACg -3'
miRNA:   3'- uCCGCGAUUUCG------------UCU-------UCG-CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 28042 0.66 0.760063
Target:  5'- cGGCGCUGGcgcuGGCGgucGAGGCgGUGgCGGCa -3'
miRNA:   3'- uCCGCGAUU----UCGU---CUUCG-CGCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 29810 0.67 0.707224
Target:  5'- cAGGCGCgGGAGCucGGcauccaacgcGGCGCGCUuGCc -3'
miRNA:   3'- -UCCGCGaUUUCGu-CU----------UCGCGCGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 29854 0.66 0.790276
Target:  5'- uGGCaGCagGucGCGGAAGCGC-UCGACa -3'
miRNA:   3'- uCCG-CGa-UuuCGUCUUCGCGcGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 30405 0.68 0.685488
Target:  5'- -aGCGCUuuAuCGGAgAGCGCGUCGGCa -3'
miRNA:   3'- ucCGCGAuuUcGUCU-UCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 30966 0.67 0.749713
Target:  5'- cGGgGCUccAGCGGGucggcgggcGGCGUGCCGu- -3'
miRNA:   3'- uCCgCGAuuUCGUCU---------UCGCGCGGUug -5'
18254 3' -54.5 NC_004681.1 + 32962 0.69 0.629334
Target:  5'- cGGGUGCUucGGCAacccguaccgcgcGAAGgGUGUCAGCu -3'
miRNA:   3'- -UCCGCGAuuUCGU-------------CUUCgCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 33494 0.68 0.70073
Target:  5'- uGGCGCcGAuGCGGuucaggugccacacGGCGCGCgCGACg -3'
miRNA:   3'- uCCGCGaUUuCGUCu-------------UCGCGCG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 33673 0.66 0.808657
Target:  5'- -uGCGCUucgccgcgggaguGAAGCGcucGAAGagcgGCGCCAACa -3'
miRNA:   3'- ucCGCGA-------------UUUCGU---CUUCg---CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 34539 0.68 0.652526
Target:  5'- cGGGCGCc---GCGGuGGCGCGCUu-- -3'
miRNA:   3'- -UCCGCGauuuCGUCuUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 34668 0.73 0.366128
Target:  5'- gAGGCGCacaagccgaaGAAGUccacaccgaAGAAGCGCGCCAccGCg -3'
miRNA:   3'- -UCCGCGa---------UUUCG---------UCUUCGCGCGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.