miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 1197 0.66 0.759034
Target:  5'- gAGGCGCUcguagauGGCcuuGAGGCGCucgcgcuGCCAGg -3'
miRNA:   3'- -UCCGCGAuu-----UCGu--CUUCGCG-------CGGUUg -5'
18254 3' -54.5 NC_004681.1 + 2331 0.71 0.479901
Target:  5'- cGGCGCccacuucuGCGuGccGCGCGCCAACa -3'
miRNA:   3'- uCCGCGauuu----CGU-CuuCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 2434 0.77 0.227142
Target:  5'- uGGCGCgcggcacGCAGAAGUggGCGCCGACc -3'
miRNA:   3'- uCCGCGauuu---CGUCUUCG--CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 3092 0.66 0.794198
Target:  5'- cGGCGCcAAGcacgucccGCAGGAcuaccugaucggaucGCGCGcCCAGCg -3'
miRNA:   3'- uCCGCGaUUU--------CGUCUU---------------CGCGC-GGUUG- -5'
18254 3' -54.5 NC_004681.1 + 4516 0.69 0.619392
Target:  5'- cAGGCgguccaguuugGCUAGGGCAGAcucuggaauccAGUGuCGCCAAa -3'
miRNA:   3'- -UCCG-----------CGAUUUCGUCU-----------UCGC-GCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 4842 1.1 0.001089
Target:  5'- cAGGCGCUAAAGCAGAAGCGCGCCAACg -3'
miRNA:   3'- -UCCGCGAUUUCGUCUUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 5458 0.67 0.728662
Target:  5'- uGGUGaacauGCacuucaccgGGAGGCGUGCCAGCg -3'
miRNA:   3'- uCCGCgauuuCG---------UCUUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 5943 0.69 0.607255
Target:  5'- cAGGCGCUGcugagccucgGGGCuGAGGCGCuucucguGCCGc- -3'
miRNA:   3'- -UCCGCGAU----------UUCGuCUUCGCG-------CGGUug -5'
18254 3' -54.5 NC_004681.1 + 6383 0.69 0.619392
Target:  5'- uGGCGCUGucGAGggggaGGAGGCcccgGCGCCGAa -3'
miRNA:   3'- uCCGCGAU--UUCg----UCUUCG----CGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 7360 0.66 0.760063
Target:  5'- cGGCGCcGAGGUGGAcGGCcGCGUCGu- -3'
miRNA:   3'- uCCGCGaUUUCGUCU-UCG-CGCGGUug -5'
18254 3' -54.5 NC_004681.1 + 13221 0.78 0.204268
Target:  5'- uGGCaGCUuccaaGAAGCAGAAGCGCGaCCGccGCg -3'
miRNA:   3'- uCCG-CGA-----UUUCGUCUUCGCGC-GGU--UG- -5'
18254 3' -54.5 NC_004681.1 + 13682 0.66 0.768249
Target:  5'- uGGCGUggccgcccgcGGCcuuGAAGCGCGCguACg -3'
miRNA:   3'- uCCGCGauu-------UCGu--CUUCGCGCGguUG- -5'
18254 3' -54.5 NC_004681.1 + 14323 0.72 0.430262
Target:  5'- gAGGCGCgggccaauGAGCu---GCGCGCCAAg -3'
miRNA:   3'- -UCCGCGau------UUCGucuuCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 14577 0.68 0.641487
Target:  5'- cAGcGCGCccugcucGGCGGAggcGGCGCGCgCGGCg -3'
miRNA:   3'- -UC-CGCGauu----UCGUCU---UCGCGCG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 15022 0.66 0.760063
Target:  5'- uGGCGUUAccgaAGGCGuacuggaacugcGAGGCGaCGUCGGCg -3'
miRNA:   3'- uCCGCGAU----UUCGU------------CUUCGC-GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 15232 0.69 0.619392
Target:  5'- uGGGCGUcaUGAAGCAGAucaaCGaCGCCAu- -3'
miRNA:   3'- -UCCGCG--AUUUCGUCUuc--GC-GCGGUug -5'
18254 3' -54.5 NC_004681.1 + 16149 0.66 0.774329
Target:  5'- -uGCGUUGcGGCGGAugcggugacagcggcGGCGCccuuGCCAGCa -3'
miRNA:   3'- ucCGCGAUuUCGUCU---------------UCGCG----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 17321 0.71 0.521542
Target:  5'- cGGGaCGCUAcacGCAGGaucAGCGCGgCGACc -3'
miRNA:   3'- -UCC-GCGAUuu-CGUCU---UCGCGCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 17404 0.67 0.739242
Target:  5'- -aGCGUccc-GCGGGcacGCGCGCCAGCa -3'
miRNA:   3'- ucCGCGauuuCGUCUu--CGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 18209 0.66 0.780356
Target:  5'- cGGUGCcu-GGCcGggG-GCGCCGAUg -3'
miRNA:   3'- uCCGCGauuUCGuCuuCgCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.