miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 61868 0.67 0.739242
Target:  5'- cGGCGUgAAgacuacucGGUGGAGGCGUGCCu-- -3'
miRNA:   3'- uCCGCGaUU--------UCGUCUUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 32962 0.69 0.629334
Target:  5'- cGGGUGCUucGGCAacccguaccgcgcGAAGgGUGUCAGCu -3'
miRNA:   3'- -UCCGCGAuuUCGU-------------CUUCgCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 34539 0.68 0.652526
Target:  5'- cGGGCGCc---GCGGuGGCGCGCUu-- -3'
miRNA:   3'- -UCCGCGauuuCGUCuUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 59651 0.68 0.674538
Target:  5'- cGGGCGUccGAAGCGGuGGGCuuccaGCCAACa -3'
miRNA:   3'- -UCCGCGa-UUUCGUC-UUCGcg---CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 30405 0.68 0.685488
Target:  5'- -aGCGCUuuAuCGGAgAGCGCGUCGGCa -3'
miRNA:   3'- ucCGCGAuuUcGUCU-UCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 38967 0.68 0.685488
Target:  5'- -cGCGgUGAAGCAGuucauGCGCugggugGCCGACg -3'
miRNA:   3'- ucCGCgAUUUCGUCuu---CGCG------CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 29810 0.67 0.707224
Target:  5'- cAGGCGCgGGAGCucGGcauccaacgcGGCGCGCUuGCc -3'
miRNA:   3'- -UCCGCGaUUUCGu-CU----------UCGCGCGGuUG- -5'
18254 3' -54.5 NC_004681.1 + 62957 0.67 0.728662
Target:  5'- cGGCGgUGGuGGCGGcGGCGgCGCgAGCa -3'
miRNA:   3'- uCCGCgAUU-UCGUCuUCGC-GCGgUUG- -5'
18254 3' -54.5 NC_004681.1 + 58481 0.67 0.737135
Target:  5'- uGGGCGCcgcgugaaccgcGAGGCAGuccAGGCGCuGCgCGACa -3'
miRNA:   3'- -UCCGCGa-----------UUUCGUC---UUCGCG-CG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 15232 0.69 0.619392
Target:  5'- uGGGCGUcaUGAAGCAGAucaaCGaCGCCAu- -3'
miRNA:   3'- -UCCGCG--AUUUCGUCUuc--GC-GCGGUug -5'
18254 3' -54.5 NC_004681.1 + 6383 0.69 0.619392
Target:  5'- uGGCGCUGucGAGggggaGGAGGCcccgGCGCCGAa -3'
miRNA:   3'- uCCGCGAU--UUCg----UCUUCG----CGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 24849 0.69 0.586358
Target:  5'- cGGCGCg--GGCGGcGGC-CGCCAAg -3'
miRNA:   3'- uCCGCGauuUCGUCuUCGcGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 27782 0.76 0.251497
Target:  5'- cGGCGCUAAGGUgcucacuucuggAGAugggcgcGGCgGCGCCAACg -3'
miRNA:   3'- uCCGCGAUUUCG------------UCU-------UCG-CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 56333 0.73 0.374878
Target:  5'- aAGGCGUccAAGguGcAGCGCGCCuuCa -3'
miRNA:   3'- -UCCGCGauUUCguCuUCGCGCGGuuG- -5'
18254 3' -54.5 NC_004681.1 + 41976 0.72 0.420699
Target:  5'- cGGCGCUGAccugaccuacGCGGggGCGaucucgGCCAGCc -3'
miRNA:   3'- uCCGCGAUUu---------CGUCuuCGCg-----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 14323 0.72 0.430262
Target:  5'- gAGGCGCgggccaauGAGCu---GCGCGCCAAg -3'
miRNA:   3'- -UCCGCGau------UUCGucuuCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 2331 0.71 0.479901
Target:  5'- cGGCGCccacuucuGCGuGccGCGCGCCAACa -3'
miRNA:   3'- uCCGCGauuu----CGU-CuuCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 58073 0.71 0.50053
Target:  5'- uGGCGC----GUGGAAGCGCGCUgcAACg -3'
miRNA:   3'- uCCGCGauuuCGUCUUCGCGCGG--UUG- -5'
18254 3' -54.5 NC_004681.1 + 17321 0.71 0.521542
Target:  5'- cGGGaCGCUAcacGCAGGaucAGCGCGgCGACc -3'
miRNA:   3'- -UCC-GCGAUuu-CGUCU---UCGCGCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 27623 0.7 0.553669
Target:  5'- uGGCGCUGGcGGCGGcGGCGgcucugguCGCCGAUc -3'
miRNA:   3'- uCCGCGAUU-UCGUCuUCGC--------GCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.