miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 4842 1.1 0.001089
Target:  5'- cAGGCGCUAAAGCAGAAGCGCGCCAACg -3'
miRNA:   3'- -UCCGCGAUUUCGUCUUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 13221 0.78 0.204268
Target:  5'- uGGCaGCUuccaaGAAGCAGAAGCGCGaCCGccGCg -3'
miRNA:   3'- uCCG-CGA-----UUUCGUCUUCGCGC-GGU--UG- -5'
18254 3' -54.5 NC_004681.1 + 2434 0.77 0.227142
Target:  5'- uGGCGCgcggcacGCAGAAGUggGCGCCGACc -3'
miRNA:   3'- uCCGCGauuu---CGUCUUCG--CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 27782 0.76 0.251497
Target:  5'- cGGCGCUAAGGUgcucacuucuggAGAugggcgcGGCgGCGCCAACg -3'
miRNA:   3'- uCCGCGAUUUCG------------UCU-------UCG-CGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 64184 0.76 0.258744
Target:  5'- -aGCGgUGAAGCAGAGuGCGCGCUAGg -3'
miRNA:   3'- ucCGCgAUUUCGUCUU-CGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 40860 0.74 0.349055
Target:  5'- cGGCGCUGGGGauaAGAGGgauCGCCAGCa -3'
miRNA:   3'- uCCGCGAUUUCg--UCUUCgc-GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 34668 0.73 0.366128
Target:  5'- gAGGCGCacaagccgaaGAAGUccacaccgaAGAAGCGCGCCAccGCg -3'
miRNA:   3'- -UCCGCGa---------UUUCG---------UCUUCGCGCGGU--UG- -5'
18254 3' -54.5 NC_004681.1 + 56333 0.73 0.374878
Target:  5'- aAGGCGUccAAGguGcAGCGCGCCuuCa -3'
miRNA:   3'- -UCCGCGauUUCguCuUCGCGCGGuuG- -5'
18254 3' -54.5 NC_004681.1 + 41976 0.72 0.420699
Target:  5'- cGGCGCUGAccugaccuacGCGGggGCGaucucgGCCAGCc -3'
miRNA:   3'- uCCGCGAUUu---------CGUCuuCGCg-----CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 70871 0.72 0.420699
Target:  5'- cGGaGCUGAGGCGG-AGCGCuaucaaacucaaGCCAGCu -3'
miRNA:   3'- uCCgCGAUUUCGUCuUCGCG------------CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 14323 0.72 0.430262
Target:  5'- gAGGCGCgggccaauGAGCu---GCGCGCCAAg -3'
miRNA:   3'- -UCCGCGau------UUCGucuuCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 46192 0.72 0.459696
Target:  5'- aAGGCGCUu--GUugAGGAGCGCggcuucgcgGCCGACu -3'
miRNA:   3'- -UCCGCGAuuuCG--UCUUCGCG---------CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 2331 0.71 0.479901
Target:  5'- cGGCGCccacuucuGCGuGccGCGCGCCAACa -3'
miRNA:   3'- uCCGCGauuu----CGU-CuuCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 68674 0.71 0.479901
Target:  5'- uGGCccGCUGucGCuccAGGCGUGCCAGCa -3'
miRNA:   3'- uCCG--CGAUuuCGuc-UUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 58073 0.71 0.50053
Target:  5'- uGGCGC----GUGGAAGCGCGCUgcAACg -3'
miRNA:   3'- uCCGCGauuuCGUCUUCGCGCGG--UUG- -5'
18254 3' -54.5 NC_004681.1 + 42528 0.71 0.510991
Target:  5'- cGGGuCGUgcAGGCu---GCGCGCCGACg -3'
miRNA:   3'- -UCC-GCGauUUCGucuuCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 17321 0.71 0.521542
Target:  5'- cGGGaCGCUAcacGCAGGaucAGCGCGgCGACc -3'
miRNA:   3'- -UCC-GCGAUuu-CGUCU---UCGCGCgGUUG- -5'
18254 3' -54.5 NC_004681.1 + 47162 0.7 0.542887
Target:  5'- cGGCGUUccuGGCGGGGuGCGCGCUcguGCa -3'
miRNA:   3'- uCCGCGAuu-UCGUCUU-CGCGCGGu--UG- -5'
18254 3' -54.5 NC_004681.1 + 27623 0.7 0.553669
Target:  5'- uGGCGCUGGcGGCGGcGGCGgcucugguCGCCGAUc -3'
miRNA:   3'- uCCGCGAUU-UCGUCuUCGC--------GCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 24849 0.69 0.586358
Target:  5'- cGGCGCg--GGCGGcGGC-CGCCAAg -3'
miRNA:   3'- uCCGCGauuUCGUCuUCGcGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.