Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18254 | 3' | -54.5 | NC_004681.1 | + | 5943 | 0.69 | 0.607255 |
Target: 5'- cAGGCGCUGcugagccucgGGGCuGAGGCGCuucucguGCCGc- -3' miRNA: 3'- -UCCGCGAU----------UUCGuCUUCGCG-------CGGUug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 60139 | 0.69 | 0.608357 |
Target: 5'- cGGUGCcAGGuGCGGGAGC-CGCCGAa -3' miRNA: 3'- uCCGCGaUUU-CGUCUUCGcGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 38749 | 0.69 | 0.608357 |
Target: 5'- cGGGUGC-GAGGCAGAAG-GCcCCAAUc -3' miRNA: 3'- -UCCGCGaUUUCGUCUUCgCGcGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 35744 | 0.69 | 0.608357 |
Target: 5'- cGGCGggAuuucguGUgucgGGAAGCGCGCCGAUg -3' miRNA: 3'- uCCGCgaUuu----CG----UCUUCGCGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 6383 | 0.69 | 0.619392 |
Target: 5'- uGGCGCUGucGAGggggaGGAGGCcccgGCGCCGAa -3' miRNA: 3'- uCCGCGAU--UUCg----UCUUCG----CGCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 4516 | 0.69 | 0.619392 |
Target: 5'- cAGGCgguccaguuugGCUAGGGCAGAcucuggaauccAGUGuCGCCAAa -3' miRNA: 3'- -UCCG-----------CGAUUUCGUCU-----------UCGC-GCGGUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 15232 | 0.69 | 0.619392 |
Target: 5'- uGGGCGUcaUGAAGCAGAucaaCGaCGCCAu- -3' miRNA: 3'- -UCCGCG--AUUUCGUCUuc--GC-GCGGUug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 36903 | 0.69 | 0.627124 |
Target: 5'- cGGCGacaaagaggacugcCUAGucAGCgGGggGCGgGCCAGCg -3' miRNA: 3'- uCCGC--------------GAUU--UCG-UCuuCGCgCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 32962 | 0.69 | 0.629334 |
Target: 5'- cGGGUGCUucGGCAacccguaccgcgcGAAGgGUGUCAGCu -3' miRNA: 3'- -UCCGCGAuuUCGU-------------CUUCgCGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 73106 | 0.69 | 0.630439 |
Target: 5'- gGGGCGUacugcGCAGAGcaCGCGCCAAUc -3' miRNA: 3'- -UCCGCGauuu-CGUCUUc-GCGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 61171 | 0.69 | 0.630439 |
Target: 5'- cGGgGUc--GGCGGucAGCGUGCCGACg -3' miRNA: 3'- uCCgCGauuUCGUCu-UCGCGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 14577 | 0.68 | 0.641487 |
Target: 5'- cAGcGCGCccugcucGGCGGAggcGGCGCGCgCGGCg -3' miRNA: 3'- -UC-CGCGauu----UCGUCU---UCGCGCG-GUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 43914 | 0.68 | 0.652526 |
Target: 5'- uGGUGCcguAGCGGggGUggGCGCgGACc -3' miRNA: 3'- uCCGCGauuUCGUCuuCG--CGCGgUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 34539 | 0.68 | 0.652526 |
Target: 5'- cGGGCGCc---GCGGuGGCGCGCUu-- -3' miRNA: 3'- -UCCGCGauuuCGUCuUCGCGCGGuug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 34830 | 0.68 | 0.652526 |
Target: 5'- aAGGgGCggcGGCcGAAGCGCGCgGGa -3' miRNA: 3'- -UCCgCGauuUCGuCUUCGCGCGgUUg -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 49472 | 0.68 | 0.663547 |
Target: 5'- uGGGUGCUucacGCAGAAgguGUGCGCCc-- -3' miRNA: 3'- -UCCGCGAuuu-CGUCUU---CGCGCGGuug -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 21548 | 0.68 | 0.663547 |
Target: 5'- gGGGCGU--AGGCAuugccgggguuGAGGaacgGCGCCAGCa -3' miRNA: 3'- -UCCGCGauUUCGU-----------CUUCg---CGCGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 62525 | 0.68 | 0.674538 |
Target: 5'- uGGGCgGCggagAGGGCGGugucGGCGC-CCAGCc -3' miRNA: 3'- -UCCG-CGa---UUUCGUCu---UCGCGcGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 59651 | 0.68 | 0.674538 |
Target: 5'- cGGGCGUccGAAGCGGuGGGCuuccaGCCAACa -3' miRNA: 3'- -UCCGCGa-UUUCGUC-UUCGcg---CGGUUG- -5' |
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18254 | 3' | -54.5 | NC_004681.1 | + | 38967 | 0.68 | 0.685488 |
Target: 5'- -cGCGgUGAAGCAGuucauGCGCugggugGCCGACg -3' miRNA: 3'- ucCGCgAUUUCGUCuu---CGCG------CGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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